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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-r.6   542340   acidic ribosomal protein P2b (rpp2b) 
 zma-u.5   542340   acidic ribosomal protein P2b (rpp2b) 
 zma-m.5   542340   acidic ribosomal protein P2b (rpp2b) 
 zma-u.5   542338   acidic ribosomal protein P2a-3 
 zma-u.5   542337   acidic ribosomal protein P2a-2 
 zma-u.5   542551   60S acidic ribosomal protein P2A-like 
 sbi-r.1   8082583   60S acidic ribosomal protein P2A 
 sbi-r.1   8064717   60S acidic ribosomal protein P2A 
 sbi-r.1   8075266   60S acidic ribosomal protein P2A 
 osa-u.5   4326782   large ribosomal subunit protein P2A 
 tae-r.2   123135098   60S acidic ribosomal protein P2B 
 tae-r.2   123189145   60S acidic ribosomal protein P2A 
 hvu-r.1   123411699   60S acidic ribosomal protein P2-C-like 
 hvu-r.1   123426652   60S acidic ribosomal protein P2A 
 hvu-r.1   123446135   60S acidic ribosomal protein P2B-like 
 bdi-r.1   100833754   60S acidic ribosomal protein P2A 
 bdi-r.1   100838935   60S acidic ribosomal protein P2A 
 ath-u.5   AT3G44590   60S acidic ribosomal protein family 
 ath-u.5   AT5G40040   60S acidic ribosomal protein family 
 ath-u.5   AT3G28500   60S acidic ribosomal protein family 
 gma-u.5   100787024   60S acidic ribosomal protein P2-2 
 gma-u.5   100791682   60S acidic ribosomal protein P2B 
 gma-u.5   100817491   60S acidic ribosomal protein P2-4 
 sly-u.5   101249089   large ribosomal subunit protein P2 
 sly-u.5   101253452   large ribosomal subunit protein P2y 
 bra-r.6   103864796   60S acidic ribosomal protein P2-2 
 bra-r.6   103829681   60S acidic ribosomal protein P2-2 
 vvi-u.5   100241445   60S acidic ribosomal protein P2B-like 
 vvi-u.5   100257998   large ribosomal subunit protein P2B 
 ppo-u.5   7474943   60S acidic ribosomal protein P2B 
 ppo-u.5   18097960   60S acidic ribosomal protein P2B 
 mtr-u.5   25480680   60S acidic ribosomal protein P2-2 
 mtr-u.5   25487532   60S acidic ribosomal protein P2-1 
 mtr-u.5   25483860   60S acidic ribosomal protein P2-4 
 ghi-r.1   107925548   60S acidic ribosomal protein P2A 
 ghi-r.1   107928203   60S acidic ribosomal protein P2A 
 ghi-r.1   107931932   60S acidic ribosomal protein P2B 
 bna-r.1   106397495   60S acidic ribosomal protein P2-1 
 bna-r.1   125606442   60S acidic ribosomal protein P2-3-like 
 bna-r.1   106352564   60S acidic ribosomal protein P2-2-like 
 sot-r.1   102577788   uncharacterized LOC102577788 
 sot-r.1   102588127   60S acidic ribosomal protein P2-like 
 cit-r.1   102608780   60S acidic ribosomal protein P2A-like 
 cit-r.1   102611784   60S acidic ribosomal protein P2-4 
 nta-r.1   107820541   large ribosomal subunit protein P2-like 
 nta-r.1   107766732   large ribosomal subunit protein P2-like 
 nta-r.1   107770879   large ribosomal subunit protein P2B 
 cre-r.1   CHLRE_02g143050v5   uncharacterized protein 

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Top 50 coexpressed genes to 542340 (zma-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542340 (zma-r.6 coexpression data)

CoexMap"542340"


zmaLOC542340 | Entrez gene ID : 542340      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 6 3 1 2 3 2 3 3 2 2 2 2 3 3 3 2 2 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03010 [list] [network] Ribosome (2925 genes)
GO BP
GO:0002182 [list] [network] cytoplasmic translational elongation  (8 genes)  IEA  
GO CC
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (112 genes)  IEA  
GO:0005840 [list] [network] ribosome  (477 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (479 genes)  IEA  
Protein NP_001105390.1 [sequence] [blastp]
NP_001365449.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  cyto 1  (predict for NP_001105390.1)
chlo 8,  cyto 1  (predict for NP_001365449.1)
Subcellular
localization
TargetP
scret 3,  other 3  (predict for NP_001105390.1)
scret 3,  other 3  (predict for NP_001365449.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-r.6
for
542340
zma-u.5
for
542340
zma-m.5
for
542340
zma-u.5
for
542338
zma-u.5
for
542337
zma-u.5
for
542551
sbi-r.1
for
8082583
sbi-r.1
for
8064717
sbi-r.1
for
8075266
osa-u.5
for
4326782
tae-r.2
for
123135098
tae-r.2
for
123189145
hvu-r.1
for
123411699
hvu-r.1
for
123426652
hvu-r.1
for
123446135
bdi-r.1
for
100833754
bdi-r.1
for
100838935
ath-u.5
for
AT3G44590
ath-u.5
for
AT5G40040
ath-u.5
for
AT3G28500
gma-u.5
for
100787024
gma-u.5
for
100791682
gma-u.5
for
100817491
sly-u.5
for
101249089
sly-u.5
for
101253452
bra-r.6
for
103864796
bra-r.6
for
103829681
vvi-u.5
for
100241445
vvi-u.5
for
100257998
ppo-u.5
for
7474943
ppo-u.5
for
18097960
mtr-u.5
for
25480680
mtr-u.5
for
25487532
mtr-u.5
for
25483860
ghi-r.1
for
107925548
ghi-r.1
for
107928203
ghi-r.1
for
107931932
bna-r.1
for
106397495
bna-r.1
for
125606442
bna-r.1
for
106352564
sot-r.1
for
102577788
sot-r.1
for
102588127
cit-r.1
for
102608780
cit-r.1
for
102611784
nta-r.1
for
107820541
nta-r.1
for
107766732
nta-r.1
for
107770879
cre-r.1
for
CHLRE_02g143050v5


Ortholog ID: 791
Species zma zma zma sbi sbi sbi osa osa tae tae hvu hvu hvu bdi bdi ath ath ath gma gma gma sly sly sly bra vvi vvi vvi ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna sot cit cit nta nta nta cre
Symbol LOC542551 LOC542323 LOC100194313 LOC8082583 LOC8075266 LOC8072508 LOC4326782 LOC4329540 LOC123045396 LOC123156814 LOC123411699 LOC123426652 LOC123446135 LOC100838935 LOC100841041 AT3G44590 AT2G27720 AT2G27710 LOC100787024 LOC100817491 LOC100499761 LOC101249089 LOC101253452 LOC101246850 LOC103854194 LOC100241445 LOC100241998 LOC100254522 LOC7474943 LOC18097960 LOC25480680 LOC25487532 LOC25483860 LOC107925548 LOC107931932 LOC107931933 LOC125606442 LOC106395681 LOC106424327 LOC102577788 LOC102608780 LOC102611784 LOC107780915 LOC107815227 LOC107808872 CHLRE_02g143050v5
Function* 60S acidic ribosomal protein P2A-like acidic ribosomal protein P2a acidic ribosomal protein P2a-4 60S acidic ribosomal protein P2A 60S acidic ribosomal protein P2A 60S acidic ribosomal protein P2B large ribosomal subunit protein P2A 60S acidic ribosomal protein P2A 60S acidic ribosomal protein P2A 60S acidic ribosomal protein P2A 60S acidic ribosomal protein P2-C-like 60S acidic ribosomal protein P2A 60S acidic ribosomal protein P2B-like 60S acidic ribosomal protein P2A 60S acidic ribosomal protein P2A 60S acidic ribosomal protein family 60S acidic ribosomal protein family 60S acidic ribosomal protein family 60S acidic ribosomal protein P2-2 60S acidic ribosomal protein P2-4 uncharacterized LOC100499761 large ribosomal subunit protein P2 large ribosomal subunit protein P2y large ribosomal subunit protein P2 60S acidic ribosomal protein P2-3-like 60S acidic ribosomal protein P2B-like large ribosomal subunit protein P2 large ribosomal subunit protein P2 60S acidic ribosomal protein P2B 60S acidic ribosomal protein P2B 60S acidic ribosomal protein P2-2 60S acidic ribosomal protein P2-1 60S acidic ribosomal protein P2-4 60S acidic ribosomal protein P2A 60S acidic ribosomal protein P2B 60S acidic ribosomal protein P2A 60S acidic ribosomal protein P2-3-like 60S acidic ribosomal protein P2-3-like 60S acidic ribosomal protein P2-2 uncharacterized LOC102577788 60S acidic ribosomal protein P2A-like 60S acidic ribosomal protein P2-4 large ribosomal subunit protein P2-like large ribosomal subunit protein P2A large ribosomal subunit protein P2w-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae04120 Ubiquitin mediated proteolysis 5
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 14
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 20
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 21
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 542551 542323 100194313 8082583 8075266 8072508 4326782 4329540 123045396 123156814 123411699 123426652 123446135 100838935 100841041 823584 817318 817317 100787024 100817491 100499761 101249089 101253452 101246850 103854194 100241445 100241998 100254522 7474943 18097960 25480680 25487532 25483860 107925548 107931932 107931933 125606442 106395681 106424327 102577788 102608780 102611784 107780915 107815227 107808872 5720458
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