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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-r.6   542726   ribosomal protein13 
 zma-u.5   542726   ribosomal protein13 
 zma-m.5   542726   ribosomal protein13 
 zma-u.5   100216794   40S ribosomal protein S13 
 zma-u.5   100272255   ribosomal protein13 
 sbi-r.1   8066103   40S ribosomal protein S13 
 sbi-r.1   8055671   40S ribosomal protein S13-1 
 sbi-r.1   8066106   40S ribosomal protein S13 
 osa-u.5   4343679   small ribosomal subunit protein uS15y-like 
 osa-u.5   4344524   40S ribosomal protein S13-2-like 
 osa-u.5   4344523   40S ribosomal protein S13-1 
 tae-r.2   123052329   40S ribosomal protein S13-1 
 tae-r.2   123044469   40S ribosomal protein S13-1 
 tae-r.2   543174   40S ribosomal protein S13-1 
 hvu-r.1   123407256   40S ribosomal protein S13-1 
 hvu-r.1   123425609   40S ribosomal protein S13-1-like 
 bdi-r.1   100840839   40S ribosomal protein S13 
 bdi-r.1   100839929   40S ribosomal protein S13 
 bdi-r.1   100825183   40S ribosomal protein S13-1 
 ath-u.5   AT3G60770   Ribosomal protein S13/S15 
 ath-u.5   RPS13A   ribosomal protein S13A 
 gma-u.5   100782821   40S ribosomal protein S13 
 gma-u.5   100781750   40S ribosomal protein S13 
 gma-u.5   100790163   40S ribosomal protein S13 
 sly-u.5   101264827   small ribosomal subunit protein uS15 
 sly-u.5   101251264   small ribosomal subunit protein uS15 
 sly-u.5   101250446   small ribosomal subunit protein uS15 
 bra-r.6   103830271   40S ribosomal protein S13-2 
 bra-r.6   103854679   40S ribosomal protein S13-2-like 
 vvi-u.5   100242961   small ribosomal subunit protein uS15 
 vvi-u.5   100242146   small ribosomal subunit protein uS15 
 ppo-u.5   7476757   40S ribosomal protein S13 
 ppo-u.5   7461714   40S ribosomal protein S13 
 ppo-u.5   7482181   40S ribosomal protein S13-2 
 mtr-u.5   11425556   40S ribosomal protein S13 
 mtr-u.5   11443116   40S ribosomal protein S13 
 mtr-u.5   11409996   40S ribosomal protein S13 
 ghi-r.1   107900848   40S ribosomal protein S13 
 ghi-r.1   107920890   40S ribosomal protein S13 
 ghi-r.1   107930160   40S ribosomal protein S13 
 bna-r.1   111215159   40S ribosomal protein S13-2 
 bna-r.1   125595018   40S ribosomal protein S13-2 
 bna-r.1   106452584   40S ribosomal protein S13-2 
 sot-r.1   102599913   40S ribosomal protein S13 
 sot-r.1   102595052   40S ribosomal protein S13 
 sot-r.1   102587574   40S ribosomal protein S13-like 
 cit-r.1   102623025   40S ribosomal protein S13 
 cit-r.1   102619943   40S ribosomal protein S13 
 nta-r.1   107827027   small ribosomal subunit protein uS15-like 
 nta-r.1   107789702   small ribosomal subunit protein uS15 
 nta-r.1   107789793   small ribosomal subunit protein uS15 
 cre-r.1   CHLRE_07g331900v5   ribosomal protein S13 

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Top 50 coexpressed genes to 542726 (zma-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542726 (zma-r.6 coexpression data)

CoexMap"542726"


zmaLOC542726 | Entrez gene ID : 542726    
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 5 3 3 3 2 3 2 3 3 2 2 3 3 3 3 3 2 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03010 [list] [network] Ribosome (2925 genes)
GO BP
GO:0006412 [list] [network] translation  (661 genes)  IEA  
GO CC
GO:0022627 [list] [network] cytosolic small ribosomal subunit  (70 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (246 genes)  IEA  
GO:0005840 [list] [network] ribosome  (477 genes)  IEA  
GO MF
GO:0070181 [list] [network] small ribosomal subunit rRNA binding  (9 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (479 genes)  IEA  
Protein NP_001105708.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 2,  mito 2,  chlo_mito 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_001105708.2)
Subcellular
localization
TargetP
mito 6  (predict for NP_001105708.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-r.6
for
542726
zma-u.5
for
542726
zma-m.5
for
542726
zma-u.5
for
100216794
zma-u.5
for
100272255
sbi-r.1
for
8066103
sbi-r.1
for
8055671
sbi-r.1
for
8066106
osa-u.5
for
4343679
osa-u.5
for
4344524
osa-u.5
for
4344523
tae-r.2
for
123052329
tae-r.2
for
123044469
tae-r.2
for
543174
hvu-r.1
for
123407256
hvu-r.1
for
123425609
bdi-r.1
for
100840839
bdi-r.1
for
100839929
bdi-r.1
for
100825183
ath-u.5
for
AT3G60770
ath-u.5
for
RPS13A
gma-u.5
for
100782821
gma-u.5
for
100781750
gma-u.5
for
100790163
sly-u.5
for
101264827
sly-u.5
for
101251264
sly-u.5
for
101250446
bra-r.6
for
103830271
bra-r.6
for
103854679
vvi-u.5
for
100242961
vvi-u.5
for
100242146
ppo-u.5
for
7476757
ppo-u.5
for
7461714
ppo-u.5
for
7482181
mtr-u.5
for
11425556
mtr-u.5
for
11443116
mtr-u.5
for
11409996
ghi-r.1
for
107900848
ghi-r.1
for
107920890
ghi-r.1
for
107930160
bna-r.1
for
111215159
bna-r.1
for
125595018
bna-r.1
for
106452584
sot-r.1
for
102599913
sot-r.1
for
102595052
sot-r.1
for
102587574
cit-r.1
for
102623025
cit-r.1
for
102619943
nta-r.1
for
107827027
nta-r.1
for
107789702
nta-r.1
for
107789793
cre-r.1
for
CHLRE_07g331900v5


Ortholog ID: 1210
Species zma zma zma sbi sbi sbi osa osa osa tae tae tae hvu hvu bdi bdi bdi ath ath gma gma gma sly sly sly bra bra bra vvi vvi ppo ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna sot sot sot cit cit nta nta nta cre
Symbol LOC542726 LOC100216794 LOC100272255 LOC8066103 LOC8055671 LOC8066106 LOC4343679 LOC4344524 LOC4344523 LOC123052329 LOC123147547 LOC123188080 LOC123407256 LOC123425609 LOC100840839 LOC100839929 LOC100825183 AT3G60770 RPS13A LOC100781750 LOC100790163 RPS13 LOC101264827 LOC101250446 ACI39 LOC103854679 LOC103866881 LOC103862863 LOC100242961 LOC100242146 LOC7476757 LOC7461714 LOC7482181 LOC11425556 LOC11443116 LOC11409996 LOC107930160 LOC121204480 LOC107952900 LOC111215159 LOC106452584 LOC106390357 LOC102587574 LOC102586531 LOC102582176 LOC102623025 LOC102619943 LOC107827027 LOC107808791 LOC142177559 CHLRE_07g331900v5
Function* ribosomal protein13 40S ribosomal protein S13 ribosomal protein13 40S ribosomal protein S13 40S ribosomal protein S13-1 40S ribosomal protein S13 small ribosomal subunit protein uS15y-like 40S ribosomal protein S13-2-like 40S ribosomal protein S13-1 40S ribosomal protein S13-1 40S ribosomal protein S13-1 40S ribosomal protein S13-1 40S ribosomal protein S13-1 40S ribosomal protein S13-1-like 40S ribosomal protein S13 40S ribosomal protein S13 40S ribosomal protein S13-1 Ribosomal protein S13/S15 ribosomal protein S13A 40S ribosomal protein S13 40S ribosomal protein S13 ribosomal protein S13 small ribosomal subunit protein uS15 small ribosomal subunit protein uS15 cytoplasmic ribosomal protein S13 40S ribosomal protein S13-2-like 40S ribosomal protein S13-2 40S ribosomal protein S13-2 small ribosomal subunit protein uS15 small ribosomal subunit protein uS15 40S ribosomal protein S13 40S ribosomal protein S13 40S ribosomal protein S13-2 40S ribosomal protein S13 40S ribosomal protein S13 40S ribosomal protein S13 40S ribosomal protein S13 40S ribosomal protein S13 40S ribosomal protein S13 40S ribosomal protein S13-2 40S ribosomal protein S13-2 40S ribosomal protein S13-2-like 40S ribosomal protein S13-like 40S ribosomal protein S13 40S ribosomal protein S13-like 40S ribosomal protein S13 40S ribosomal protein S13 small ribosomal subunit protein uS15-like small ribosomal subunit protein uS15 small ribosomal subunit protein uS15-like ribosomal protein S13
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 16
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 20
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 12
hvu03018 RNA degradation 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 18
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 15
bdi03040 Spliceosome 3
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 13
gma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03013 Nucleocytoplasmic transport 3
mtr03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
ghi00053 Ascorbate and aldarate metabolism 3
ghi00520 Amino sugar and nucleotide sugar metabolism 3
ghi01240 Biosynthesis of cofactors 3
ghi01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 13
ghi00053 Ascorbate and aldarate metabolism 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 19
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 19
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 8
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 16
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 16
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 18
nta00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 19
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 542726 100216794 100272255 8066103 8055671 8066106 4343679 4344524 4344523 123052329 123147547 123188080 123407256 123425609 100840839 100839929 100825183 825248 828167 100781750 100790163 547745 101264827 101250446 778333 103854679 103866881 103862863 100242961 100242146 7476757 7461714 7482181 11425556 11443116 11409996 107930160 121204480 107952900 111215159 106452584 106390357 102587574 102586531 102582176 102623025 102619943 107827027 107808791 142177559 5716018
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