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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100217116   pseudouridylate synthase 
 zma-r.6   100217116   pseudouridylate synthase 
 sbi-r.1   8070563   tRNA pseudouridine synthase A 1 
 osa-u.5   9267107   uncharacterized LOC9267107 
 tae-r.2   123043153   tRNA pseudouridine synthase A 1 
 tae-r.2   123180737   tRNA pseudouridine synthase A 1 
 hvu-r.1   123428147   tRNA pseudouridine synthase A 1 
 bdi-r.1   100831265   tRNA pseudouridine synthase A 1 
 ath-u.5   AT3G06950   Pseudouridine synthase family protein 
 gma-u.5   100801367   tRNA pseudouridine synthase A 1 
 gma-u.5   100775575   tRNA pseudouridine synthase A 1 
 sly-u.5   101244488   uncharacterized LOC101244488 
 bra-r.6   103859192   tRNA pseudouridine synthase A 1 
 vvi-u.5   100254503   uncharacterized LOC100254503 
 ppo-u.5   7481646   uncharacterized LOC7481646 
 mtr-u.5   11419568   tRNA pseudouridine synthase A 1 
 ghi-r.1   107951548   tRNA pseudouridine synthase A 1 
 sot-r.1   102600948   tRNA pseudouridine synthase A 1 
 cit-r.1   102611421   uncharacterized LOC102611421 
 nta-r.1   107780745   uncharacterized LOC107780745 
 nta-r.1   107827274   uncharacterized LOC107827274 
 cre-r.1   CHLRE_13g591501v5   uncharacterized protein 

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Top 50 coexpressed genes to 100217116 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100217116 (zma-u.5 coexpression data)

CoexMap"100217116"


zmaLOC100217116 | Entrez gene ID : 100217116    
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi sot cit nta cre bna
Paralog 2 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031119 [list] [network] tRNA pseudouridine synthesis  (7 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (21 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
Protein NP_001136956.1 [sequence] [blastp]
NP_001346548.1 [sequence] [blastp]
XP_008681316.1 [sequence] [blastp]
XP_020408711.1 [sequence] [blastp]
XP_020408712.1 [sequence] [blastp]
XP_020408714.1 [sequence] [blastp]
XP_035823653.1 [sequence] [blastp]
XP_035823654.1 [sequence] [blastp]
XP_035823655.1 [sequence] [blastp]
XP_035823656.1 [sequence] [blastp]
XP_035823657.1 [sequence] [blastp]
XP_035823658.1 [sequence] [blastp]
XP_035823659.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  plas 1,  nucl_plas 1  (predict for NP_001136956.1)
mito 7,  chlo 3  (predict for NP_001346548.1)
mito 6,  chlo 3  (predict for XP_008681316.1)
mito 7,  chlo 2  (predict for XP_020408711.1)
mito 6,  chlo 3  (predict for XP_020408712.1)
mito 6,  chlo 4  (predict for XP_020408714.1)
mito 7,  chlo 2  (predict for XP_035823653.1)
mito 5,  chlo 3,  nucl 2  (predict for XP_035823654.1)
mito 5,  chlo 3,  nucl 2  (predict for XP_035823655.1)
mito 5,  chlo 3,  nucl 2  (predict for XP_035823656.1)
chlo 4,  cyto 4,  mito 1,  extr 1,  vacu 1  (predict for XP_035823657.1)
chlo 4,  cyto 4,  mito 1,  extr 1,  vacu 1  (predict for XP_035823658.1)
cyto 6,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_035823659.1)
Subcellular
localization
TargetP
other 5,  mito 4  (predict for NP_001136956.1)
mito 8  (predict for NP_001346548.1)
mito 7  (predict for XP_008681316.1)
mito 7  (predict for XP_020408711.1)
mito 7  (predict for XP_020408712.1)
mito 7  (predict for XP_020408714.1)
mito 7  (predict for XP_035823653.1)
chlo 3,  mito 3  (predict for XP_035823654.1)
chlo 3,  mito 3  (predict for XP_035823655.1)
chlo 3,  mito 3  (predict for XP_035823656.1)
chlo 6  (predict for XP_035823657.1)
chlo 6  (predict for XP_035823658.1)
other 5,  mito 4  (predict for XP_035823659.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100217116
zma-r.6
for
100217116
sbi-r.1
for
8070563
osa-u.5
for
9267107
tae-r.2
for
123043153
tae-r.2
for
123180737
hvu-r.1
for
123428147
bdi-r.1
for
100831265
ath-u.5
for
AT3G06950
gma-u.5
for
100801367
gma-u.5
for
100775575
sly-u.5
for
101244488
bra-r.6
for
103859192
vvi-u.5
for
100254503
ppo-u.5
for
7481646
mtr-u.5
for
11419568
ghi-r.1
for
107951548
sot-r.1
for
102600948
cit-r.1
for
102611421
nta-r.1
for
107780745
nta-r.1
for
107827274
cre-r.1
for
CHLRE_13g591501v5


Ortholog ID: 10737
Species zma sbi osa tae tae hvu bdi ath gma gma sly bra vvi ppo mtr ghi sot cit nta nta cre
Symbol LOC100217116 LOC8070563 LOC9267107 LOC123043153 LOC123180737 LOC123428147 LOC100831265 AT3G06950 LOC100801367 LOC100775575 LOC101244488 LOC103859192 LOC100254503 LOC7481646 LOC11419568 LOC107951548 LOC102600948 LOC102611421 LOC107780745 LOC107827274 CHLRE_13g591501v5
Function* pseudouridylate synthase tRNA pseudouridine synthase A 1 uncharacterized LOC9267107 tRNA pseudouridine synthase A 1 tRNA pseudouridine synthase A 1 tRNA pseudouridine synthase A 1 tRNA pseudouridine synthase A 1 Pseudouridine synthase family protein tRNA pseudouridine synthase A 1 tRNA pseudouridine synthase A 1 uncharacterized LOC101244488 tRNA pseudouridine synthase A 1 uncharacterized LOC100254503 uncharacterized LOC7481646 tRNA pseudouridine synthase A 1 tRNA pseudouridine synthase A 1 tRNA pseudouridine synthase A 1 uncharacterized LOC102611421 uncharacterized LOC107780745 uncharacterized LOC107827274 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04626 Plant-pathogen interaction 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00561 Glycerolipid metabolism 2
gma00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00564 Glycerophospholipid metabolism 2
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100217116 8070563 9267107 123043153 123180737 123428147 100831265 819880 100801367 100775575 101244488 103859192 100254503 7481646 11419568 107951548 102600948 102611421 107780745 107827274 5718650
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