ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100273616	uncharacterized LOC100273616
zma-r.6	100273616	uncharacterized LOC100273616
zma-u.5	100273483	uncharacterized LOC100273483
zma-u.5	100280442	uncharacterized LOC100280442
zma-u.5	100279070	uncharacterized LOC100279070
sbi-r.1	110431210	uncharacterized LOC110431210
sbi-r.1	8073204	uncharacterized LOC8073204
sbi-r.1	8060442	uncharacterized LOC8060442
osa-u.5	4342135	protein REVEILLE 1
osa-u.5	4330349	protein REVEILLE 1
osa-u.5	4336779	uncharacterized LOC4336779
tae-r.2	123190414	protein REVEILLE 2
tae-r.2	123046701	protein REVEILLE 7
tae-r.2	123054556	protein REVEILLE 7
hvu-r.1	123427840	protein REVEILLE 1-like
hvu-r.1	123407640	protein LHY-like
hvu-r.1	123401551	protein REVEILLE 1-like
bdi-r.1	100829508	myb-like protein H
bdi-r.1	100837761	protein REVEILLE 2
bdi-r.1	100842816	protein REVEILLE 7-like
ath-u.5	RVE2	Homeodomain-like superfamily protein
ath-u.5	EPR1	Homeodomain-like superfamily protein
ath-u.5	RVE1	Homeodomain-like superfamily protein
gma-u.5	780539	protein REVEILLE 1
gma-u.5	778089	protein REVEILLE 7
gma-u.5	MYB173	MYB transcription factor MYB173
sly-u.5	101261079	protein REVEILLE 1
sly-u.5	101255972	protein REVEILLE 7
bra-r.6	103846255	protein REVEILLE 1
bra-r.6	103851098	protein REVEILLE 1
bra-r.6	103856239	protein REVEILLE 1
vvi-u.5	100263252	protein REVEILLE 1
ppo-u.5	18106485	protein REVEILLE 1
ppo-u.5	7494524	protein REVEILLE 1
ppo-u.5	18105607	protein REVEILLE 7
mtr-u.5	11427268	protein REVEILLE 1
mtr-u.5	25497345	protein REVEILLE 7
ghi-r.1	121211262	protein REVEILLE 7
ghi-r.1	107953319	protein REVEILLE 7
ghi-r.1	107926642	protein REVEILLE 2
bna-r.1	111211014	protein REVEILLE 1
bna-r.1	111202817	protein REVEILLE 1-like
bna-r.1	111214517	protein REVEILLE 7-like
sot-r.1	102602066	protein REVEILLE 1
cit-r.1	102630458	protein REVEILLE 1
cit-r.1	102614255	protein REVEILLE 7-like
nta-r.1	107774404	protein REVEILLE 1
nta-r.1	107806142	uncharacterized LOC107806142
nta-r.1	107801057	protein REVEILLE 1-like
cre-r.1	CHLRE_06g275350v5	uncharacterized protein

Top 50 coexpressed genes to 100273616 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100273616 (zma-u.5 coexpression data)

CoexMap"100273616"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003677 [list] [network] DNA binding

(2288 genes)

IEA

Protein

NP_001141504.1 [sequence] [blastp]
XP_008676826.1 [sequence] [blastp]
XP_008676827.1 [sequence] [blastp]
XP_020406957.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for NP_001141504.1)
nucl 9	(predict for XP_008676826.1)
nucl 9	(predict for XP_008676827.1)
nucl 9	(predict for XP_020406957.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001141504.1)
other 9	(predict for XP_008676826.1)
other 7, mito 4	(predict for XP_008676827.1)
other 9	(predict for XP_020406957.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100273616	zma-r.6 for 100273616	zma-u.5 for 100273483	zma-u.5 for 100280442	zma-u.5 for 100279070	sbi-r.1 for 110431210	sbi-r.1 for 8073204	sbi-r.1 for 8060442	osa-u.5 for 4342135	osa-u.5 for 4330349	osa-u.5 for 4336779	tae-r.2 for 123190414	tae-r.2 for 123046701	tae-r.2 for 123054556	hvu-r.1 for 123427840	hvu-r.1 for 123407640	hvu-r.1 for 123401551	bdi-r.1 for 100829508	bdi-r.1 for 100837761	bdi-r.1 for 100842816	ath-u.5 for RVE2	ath-u.5 for EPR1	ath-u.5 for RVE1	gma-u.5 for 780539	gma-u.5 for 778089	gma-u.5 for MYB173	sly-u.5 for 101261079	sly-u.5 for 101255972	bra-r.6 for 103846255	bra-r.6 for 103851098	bra-r.6 for 103856239	vvi-u.5 for 100263252	ppo-u.5 for 18106485	ppo-u.5 for 7494524	ppo-u.5 for 18105607	mtr-u.5 for 11427268	mtr-u.5 for 25497345	ghi-r.1 for 121211262	ghi-r.1 for 107953319	ghi-r.1 for 107926642	bna-r.1 for 111211014	bna-r.1 for 111202817	bna-r.1 for 111214517	sot-r.1 for 102602066	cit-r.1 for 102630458	cit-r.1 for 102614255	nta-r.1 for 107774404	nta-r.1 for 107806142	nta-r.1 for 107801057	cre-r.1 for CHLRE_06g275350v5

Ortholog

Ortholog ID: 1576

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

RVE2

EPR1

RVE1

LOC778089

MYB173

MYB177

EPR1

Function^*

uncharacterized LOC100273483

uncharacterized LOC100279070

uncharacterized LOC100276850

uncharacterized LOC110431210

uncharacterized LOC8073204

uncharacterized LOC8060442

protein REVEILLE 1

uncharacterized LOC4336779

protein REVEILLE 2

protein REVEILLE 7

protein REVEILLE 1

protein REVEILLE 1-like

protein LHY-like

protein REVEILLE 1-like

myb-like protein H

protein REVEILLE 2

protein REVEILLE 7-like

Homeodomain-like superfamily protein

protein REVEILLE 7

MYB transcription factor MYB173

MYB transcription factor MYB177

protein REVEILLE 1

protein REVEILLE 7

protein REVEILLE 1

protein REVEILLE 7

protein REVEILLE 1

protein REVEILLE 7

protein REVEILLE 1

protein REVEILLE 7

protein REVEILLE 2

protein REVEILLE 1

protein REVEILLE 1-like

protein REVEILLE 1

protein REVEILLE 7-like

uncharacterized LOC107796078

protein REVEILLE 1

uncharacterized LOC107812899

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	3
mtr00270	Cysteine and methionine metabolism	2
mtr00330	Arginine and proline metabolism	2
mtr04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00860	Porphyrin metabolism	4

Expression

Expression pattern

Entrez Gene ID^*

100273483

100279070

100276850

110431210

8073204

8060442

4342135

4330349

4336779

123190414

123046701

100873110

123427840

123407640

123401551

100829508

100837761

100842816

833700

838413

831595

778089

778058

778060

101261079

101255972

103846255

103851098

103872597

100263252

18106485

18105607

7485192

11427268

25497345

121211262

107953319

107926642

111211014

111202817

106387719

102602066

102630458

102614255

107796078

107784585

107812899

5721757

The preparation time of this page was 0.1 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	3	3	3	3	3	3	3	2	3	1	3	2	3	3	1	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100273616 (zma-u.5 coexpression data)

Top 50 enrichment test to 100273616 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**