ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	100280262	uncharacterized LOC100280262
zma-r.6	100280262	uncharacterized LOC100280262
zma-m.5	100280262	uncharacterized LOC100280262
sbi-r.1	8083285	probable ribosomal RNA small subunit methyltransferase B
osa-u.5	4347368	uncharacterized LOC4347368
tae-r.2	123121828	probable ribosomal RNA small subunit methyltransferase B
tae-r.2	123104082	probable ribosomal RNA small subunit methyltransferase B
tae-r.2	123112306	probable ribosomal RNA small subunit methyltransferase B
hvu-r.1	123399157	probable ribosomal RNA small subunit methyltransferase B
bdi-r.1	100845015	probable ribosomal RNA small subunit methyltransferase B
ath-u.5	AT3G13180	NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein
gma-u.5	100779327	probable ribosomal RNA small subunit methyltransferase B
sly-u.5	101247890	uncharacterized LOC101247890
bra-r.6	103849752	probable ribosomal RNA small subunit methyltransferase B
vvi-u.5	100253242	uncharacterized LOC100253242
ppo-u.5	7485114	uncharacterized LOC7485114
mtr-u.5	11426017	probable ribosomal RNA small subunit methyltransferase B
ghi-r.1	107952987	probable ribosomal RNA small subunit methyltransferase B
ghi-r.1	107920991	probable ribosomal RNA small subunit methyltransferase B
bna-r.1	106377518	probable ribosomal RNA small subunit methyltransferase B
bna-r.1	111199218	probable ribosomal RNA small subunit methyltransferase B
sot-r.1	102595970	ribosomal RNA small subunit methyltransferase B
cit-r.1	102629461	uncharacterized LOC102629461
nta-r.1	107820730	uncharacterized LOC107820730
nta-r.1	107766162	uncharacterized LOC107766162
cre-r.1	CHLRE_50g761447v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0001510 [list] [network] RNA methylation	(66 genes)	IEA
GO:0006364 [list] [network] rRNA processing	(222 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1994 genes)	IEA

GO CC

GO MF

GO:0008649 [list] [network] rRNA methyltransferase activity	(23 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1549 genes)	IEA

Protein

NP_001146662.1 [sequence] [blastp]
XP_008667856.1 [sequence] [blastp]
XP_008667858.1 [sequence] [blastp]
XP_008667859.1 [sequence] [blastp]
XP_035820654.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10	(predict for NP_001146662.1)
chlo 9, cyto 1, mito 1	(predict for XP_008667856.1)
chlo 10	(predict for XP_008667858.1)
cyto 4, extr 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2	(predict for XP_008667859.1)
cyto 6, chlo 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3	(predict for XP_035820654.1)

Subcellular
localization
TargetP

chlo 8	(predict for NP_001146662.1)
chlo 9	(predict for XP_008667856.1)
chlo 8	(predict for XP_008667858.1)
other 5, mito 3	(predict for XP_008667859.1)
other 7	(predict for XP_035820654.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100280262	zma-r.6 for 100280262	zma-m.5 for 100280262	sbi-r.1 for 8083285	osa-u.5 for 4347368	tae-r.2 for 123121828	tae-r.2 for 123104082	tae-r.2 for 123112306	hvu-r.1 for 123399157	bdi-r.1 for 100845015	ath-u.5 for AT3G13180	gma-u.5 for 100779327	sly-u.5 for 101247890	bra-r.6 for 103849752	vvi-u.5 for 100253242	ppo-u.5 for 7485114	mtr-u.5 for 11426017	ghi-r.1 for 107952987	ghi-r.1 for 107920991	bna-r.1 for 106377518	bna-r.1 for 111199218	sot-r.1 for 102595970	cit-r.1 for 102629461	nta-r.1 for 107820730	nta-r.1 for 107766162	cre-r.1 for CHLRE_50g761447v5

Ortholog

Ortholog ID: 10763

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC100280262