ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	103626849	copper-transporting ATPase HMA4
zma-r.6	103626849	copper-transporting ATPase HMA4
zma-m.5	103626849	copper-transporting ATPase HMA4
zma-u.5	100274413	Putative ATP dependent copper transporter
zma-u.5	100501149	Copper-transporting ATPase RAN1
zma-u.5	103646092	copper-transporting ATPase HMA5
sbi-r.1	8082897	probable copper-transporting ATPase HMA5
sbi-r.1	8077184	copper-transporting ATPase RAN1
sbi-r.1	8069396	copper-transporting ATPase RAN1
osa-u.5	4328448	cation-transporting ATPase HMA5-like
osa-u.5	4328616	copper-transporting ATPase HMA4-like
osa-u.5	4341778	cation-transporting ATPase HMA5-like
tae-r.2	123149227	cation-transporting ATPase HMA5
tae-r.2	123132560	cation-transporting ATPase HMA5
tae-r.2	123046369	copper-transporting ATPase HMA5
hvu-r.1	123409181	cation-transporting ATPase HMA5
hvu-r.1	123401671	copper-transporting ATPase HMA4
hvu-r.1	123401494	cation-transporting ATPase HMA5-like
bdi-r.1	100822339	copper-transporting ATPase HMA4
bdi-r.1	100829498	cation-transporting ATPase HMA5
bdi-r.1	100840177	copper-transporting ATPase HMA5
ath-u.5	RAN1	copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1)
ath-u.5	HMA5	heavy metal atpase 5
gma-u.5	100817431	probable copper-transporting ATPase HMA5
gma-u.5	100816893	probable copper-transporting ATPase HMA5
gma-u.5	100810141	probable copper-transporting ATPase HMA5
sly-u.5	101263483	copper-transporting ATPase RAN1
sly-u.5	101261734	probable copper-transporting ATPase HMA5
bra-r.6	103844758	probable copper-transporting ATPase HMA5
bra-r.6	103839159	copper-transporting ATPase RAN1
bra-r.6	103827826	copper-transporting ATPase RAN1
vvi-u.5	100259857	probable copper-transporting ATPase HMA5
vvi-u.5	100266338	copper-transporting ATPase RAN1
vvi-u.5	100265637	copper-transporting ATPase HMA4
ppo-u.5	7465853	probable copper-transporting ATPase HMA5
ppo-u.5	7490311	probable copper-transporting ATPase HMA5
ppo-u.5	7487032	copper-transporting ATPase HMA4
mtr-u.5	11411344	probable copper-transporting ATPase HMA5
mtr-u.5	11425509	copper-transporting ATPase HMA4
mtr-u.5	25493424	copper-transporting ATPase RAN1
ghi-r.1	107926905	probable copper-transporting ATPase HMA5
ghi-r.1	107927733	copper-transporting ATPase RAN1
ghi-r.1	107936699	probable copper-transporting ATPase HMA5
bna-r.1	125579136	probable copper-transporting ATPase HMA5
bna-r.1	106450848	probable copper-transporting ATPase HMA5
bna-r.1	106436981	probable copper-transporting ATPase HMA5
sot-r.1	102603262	copper-transporting ATPase RAN1
sot-r.1	102585130	probable copper-transporting ATPase HMA5
sot-r.1	102584814	probable copper-transporting ATPase HMA5
cit-r.1	102615719	probable copper-transporting ATPase HMA5
cit-r.1	102620411	copper-transporting ATPase HMA4
cit-r.1	102622460	probable copper-transporting ATPase HMA5
nta-r.1	107817087	copper-transporting ATPase RAN1
nta-r.1	107768661	copper-transporting ATPase RAN1
nta-r.1	107785665	copper-transporting ATPase HMA4
cre-r.1	CHLRE_16g682369v5	uncharacterized protein

Top 50 coexpressed genes to 103626849 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103626849 (zma-u.5 coexpression data)

CoexMap"103626849"

[Cytoscape]

Annotation

functional annotation

KEGG

zma04016 [list] [network] MAPK signaling pathway - plant (207 genes)

GO BP

GO:0006812 [list] [network] monoatomic cation transport

(377 genes)

IEA

GO CC

GO:0016020 [list] [network] membrane

(3751 genes)

IEA

GO MF

GO:0005507 [list] [network] copper ion binding	(82 genes)	IEA
GO:0019829 [list] [network] ATPase-coupled monoatomic cation transmembrane transporter activity	(100 genes)	IEA
GO:0016887 [list] [network] ATP hydrolysis activity	(485 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2473 genes)	IEA

Protein

XP_008645432.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 7, E.R. 1, vacu 1, golg 1, cyto_E.R. 1

(predict for XP_008645432.1)

Subcellular
localization
TargetP

chlo 6, other 5

(predict for XP_008645432.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103626849	zma-r.6 for 103626849	zma-m.5 for 103626849	zma-u.5 for 100274413	zma-u.5 for 100501149	zma-u.5 for 103646092	sbi-r.1 for 8082897	sbi-r.1 for 8077184	sbi-r.1 for 8069396	osa-u.5 for 4328448	osa-u.5 for 4328616	osa-u.5 for 4341778	tae-r.2 for 123149227	tae-r.2 for 123132560	tae-r.2 for 123046369	hvu-r.1 for 123409181	hvu-r.1 for 123401671	hvu-r.1 for 123401494	bdi-r.1 for 100822339	bdi-r.1 for 100829498	bdi-r.1 for 100840177	ath-u.5 for RAN1	ath-u.5 for HMA5	gma-u.5 for 100817431	gma-u.5 for 100816893	gma-u.5 for 100810141	sly-u.5 for 101263483	sly-u.5 for 101261734	bra-r.6 for 103844758	bra-r.6 for 103839159	bra-r.6 for 103827826	vvi-u.5 for 100259857	vvi-u.5 for 100266338	vvi-u.5 for 100265637	ppo-u.5 for 7465853	ppo-u.5 for 7490311	ppo-u.5 for 7487032	mtr-u.5 for 11411344	mtr-u.5 for 11425509	mtr-u.5 for 25493424	ghi-r.1 for 107926905	ghi-r.1 for 107927733	ghi-r.1 for 107936699	bna-r.1 for 125579136	bna-r.1 for 106450848	bna-r.1 for 106436981	sot-r.1 for 102603262	sot-r.1 for 102585130	sot-r.1 for 102584814	cit-r.1 for 102615719	cit-r.1 for 102620411	cit-r.1 for 102622460	nta-r.1 for 107817087	nta-r.1 for 107768661	nta-r.1 for 107785665	cre-r.1 for CHLRE_16g682369v5

Ortholog

Ortholog ID: 871

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

RAN1

HMA5

Function^*

copper-transporting ATPase HMA4

copper-transporting ATPase HMA5

cation-transporting ATPase HMA5

copper-transporting ATPase RAN1

probable copper-transporting ATPase HMA5

cation-transporting ATPase HMA5-like

copper-transporting ATPase HMA4-like

cation-transporting ATPase HMA5-like

cation-transporting ATPase HMA5

copper-transporting ATPase HMA4

cation-transporting ATPase HMA5

copper-transporting ATPase HMA4

cation-transporting ATPase HMA5-like

copper-transporting ATPase HMA4

cation-transporting ATPase HMA5

copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1)

heavy metal atpase 5

probable copper-transporting ATPase HMA5

copper-transporting ATPase RAN1

copper-transporting ATPase HMA4

copper-transporting ATPase RAN1

probable copper-transporting ATPase HMA5

copper-transporting ATPase HMA4-like

probable copper-transporting ATPase HMA5

copper-transporting ATPase RAN1

probable copper-transporting ATPase HMA5

copper-transporting ATPase HMA4

copper-transporting ATPase RAN1

probable copper-transporting ATPase HMA5

copper-transporting ATPase RAN1

copper-transporting ATPase HMA4

probable copper-transporting ATPase HMA5

copper-transporting ATPase RAN1

probable copper-transporting ATPase HMA5

copper-transporting ATPase HMA4

copper-transporting ATPase RAN1

putative copper-transporting ATPase HMA5

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	4
sbi04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	2
sbi02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae00760	Nicotinate and nicotinamide metabolism	2
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae03250	Viral life cycle - HIV-1	3
tae00760	Nicotinate and nicotinamide metabolism	2
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae04075	Plant hormone signal transduction	2
tae04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00520	Amino sugar and nucleotide sugar metabolism	2
hvu01250	Biosynthesis of nucleotide sugars	2
hvu00592	alpha-Linolenic acid metabolism	2
hvu00010	Glycolysis / Gluconeogenesis	2
hvu00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	3
hvu00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00460	Cyanoamino acid metabolism	2
bdi00500	Starch and sucrose metabolism	2
bdi00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00480	Glutathione metabolism	2
ath04141	Protein processing in endoplasmic reticulum	2
ath01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04146	Peroxisome	2
gma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	3
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2
gma00020	Citrate cycle (TCA cycle)	2
gma00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2
sly04626	Plant-pathogen interaction	2
sly04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	2
bra00630	Glyoxylate and dicarboxylate metabolism	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	4
bra04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	3
vvi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00270	Cysteine and methionine metabolism	5
ppo01230	Biosynthesis of amino acids	4
ppo00670	One carbon pool by folate	3
ppo04016	MAPK signaling pathway - plant	2
ppo00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04016	MAPK signaling pathway - plant	2
mtr00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5
mtr04120	Ubiquitin mediated proteolysis	2
mtr04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3
cit04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00052	Galactose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	4
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	4
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta02010	ABC transporters	3
nta04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00860	Porphyrin metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

103626849

103646092

103640187

8077184

8069396

8054096

4328448

4328616

4341778

123165202

123157636

123144208

123409181

123401671

123401494

100822339

100829498

100843747

834509

842650

100817431

100804960

100793894

101263483

101261734

101255059

103844758

103827826

103838278

100259857

100265045

100242756

7490311

7487032

18094634

11411344

11443067

11437639

107945236

121217620

107959312

125579136

106436981

106388787

102603262

102585130

102584814

102615719

102620411

102623787

107768661

107832108

107817495

5724817

The preparation time of this page was 0.2 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	6	3	3	3	3	3	2	3	2	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103626849 (zma-u.5 coexpression data)

Top 50 enrichment test to 103626849 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**