ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	103646129	cyclin-P4-1
zma-r.6	103646129	cyclin-P4-1
zma-u.5	103627539	cyclin-P4-1
zma-u.5	100502430	uncharacterized LOC100502430
zma-u.5	100284747	cyclin-dependent protein kinase
sbi-r.1	8076870	cyclin-P3-1
sbi-r.1	8055631	cyclin-P4-1
sbi-r.1	8055939	cyclin-P4-1
osa-u.5	4338711	cyclin-P3-1-like
osa-u.5	4336556	cyclin-P4-1-like
osa-u.5	9271995	cyclin-P1-1
tae-r.2	123091974	cyclin-P4-1
tae-r.2	123054888	cyclin-P3-1
tae-r.2	123054083	cyclin-P4-1
hvu-r.1	123441944	cyclin-P3-1-like
hvu-r.1	123430901	cyclin-P1-1
hvu-r.1	123427407	cyclin-P4-1-like
bdi-r.1	106865488	cyclin-P1-1
bdi-r.1	100824073	cyclin-P3-1
bdi-r.1	100829155	cyclin-P4-1
ath-u.5	CYCP4;1	cyclin p4;1
gma-u.5	100812468	cyclin-U4-1
gma-u.5	100806451	cyclin-U4-1
sly-u.5	101248793	cyclin-U1-1
sly-u.5	101243868	cyclin-U4-1
sly-u.5	101264373	cyclin-P3-1
bra-r.6	103869134	cyclin-U1-1
bra-r.6	103866828	cyclin-U4-1
vvi-u.5	100263322	cyclin-U4-1
vvi-u.5	100261965	cyclin-U1-1
ppo-u.5	7464676	cyclin-U3-1
ppo-u.5	18098790	cyclin-P3-1
ppo-u.5	7480042	cyclin-U3-1
mtr-u.5	25500113	cyclin-U4-1
mtr-u.5	11413228	cyclin-U1-1
mtr-u.5	25499116	cyclin-P3-1
ghi-r.1	107924293	cyclin-P3-1
ghi-r.1	107923387	cyclin-U4-1
ghi-r.1	107945573	cyclin-U4-1
bna-r.1	106454570	cyclin-U4-1-like
bna-r.1	106445979	cyclin-U1-1
sot-r.1	102581077	cyclin-U4-1
sot-r.1	102587169	cyclin-P3-1
sot-r.1	102588031	cyclin-P3-1-like
cit-r.1	127902424	cyclin-P3-1-like
cit-r.1	102619769	cyclin-U1-1
cit-r.1	127901105	cyclin-U4-1-like
nta-r.1	107818644	cyclin-P3-1
nta-r.1	107789143	cyclin-U4-1
nta-r.1	107829234	cyclin-U1-1
cre-r.1	CHLRE_02g118050v5	uncharacterized protein

Top 50 coexpressed genes to 103646129 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103646129 (zma-u.5 coexpression data)

CoexMap"103646129"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity

(18 genes)

IEA

GO CC

GO MF

GO:0019901 [list] [network] protein kinase binding

(23 genes)

IEA

Protein

XP_008669070.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 4, pero 1

(predict for XP_008669070.1)

Subcellular
localization
TargetP

other 9

(predict for XP_008669070.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103646129	zma-r.6 for 103646129	zma-u.5 for 103627539	zma-u.5 for 100502430	zma-u.5 for 100284747	sbi-r.1 for 8076870	sbi-r.1 for 8055631	sbi-r.1 for 8055939	osa-u.5 for 4338711	osa-u.5 for 4336556	osa-u.5 for 9271995	tae-r.2 for 123091974	tae-r.2 for 123054888	tae-r.2 for 123054083	hvu-r.1 for 123441944	hvu-r.1 for 123430901	hvu-r.1 for 123427407	bdi-r.1 for 106865488	bdi-r.1 for 100824073	bdi-r.1 for 100829155	ath-u.5 for CYCP4;1	gma-u.5 for 100812468	gma-u.5 for 100806451	sly-u.5 for 101248793	sly-u.5 for 101243868	sly-u.5 for 101264373	bra-r.6 for 103869134	bra-r.6 for 103866828	vvi-u.5 for 100263322	vvi-u.5 for 100261965	ppo-u.5 for 7464676	ppo-u.5 for 18098790	ppo-u.5 for 7480042	mtr-u.5 for 25500113	mtr-u.5 for 11413228	mtr-u.5 for 25499116	ghi-r.1 for 107924293	ghi-r.1 for 107923387	ghi-r.1 for 107945573	bna-r.1 for 106454570	bna-r.1 for 106445979	sot-r.1 for 102581077	sot-r.1 for 102587169	sot-r.1 for 102588031	cit-r.1 for 127902424	cit-r.1 for 102619769	cit-r.1 for 127901105	nta-r.1 for 107818644	nta-r.1 for 107789143	nta-r.1 for 107829234	cre-r.1 for CHLRE_02g118050v5

Ortholog

Ortholog ID: 426

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

CYCP4;1

CYCP1;1

Function^*

cyclin-P4-1

cyclin-dependent protein kinase

uncharacterized LOC100283473

cyclin-P3-1

cyclin-P4-1

cyclin-P3-1-like

cyclin-P4-1-like

cyclin-P1-1

cyclin-P4-1

cyclin-P3-1-like

cyclin-P4-1-like

cyclin-P1-1

cyclin-P3-1

cyclin-P4-1

cyclin p4;1

cyclin p1;1

cyclin-P3-1

cyclin box fold protein binding domain-containing protein

cyclin-U1-1-like

cyclin-U1-1

cyclin-P3-1

cyclin-U4-1

cyclin-U3-1

cyclin-U1-1

cyclin-P3-1

cyclin-U1-1

cyclin-U4-1

cyclin-P3-1

cyclin-U4-1

cyclin-U1-1

cyclin-U4-1

cyclin-U4-1-like

cyclin-U3-1

cyclin-U1-1

cyclin-U4-1

cyclin-P3-1

cyclin-P3-1-like

cyclin-U1-1

cyclin-U4-1

cyclin-P3-1-like

cyclin-U4-1-like

cyclin-P3-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	4
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	5
sbi03082	ATP-dependent chromatin remodeling	3
sbi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	3
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00240	Pyrimidine metabolism	2
tae00760	Nicotinate and nicotinamide metabolism	2
tae01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	3
hvu01230	Biosynthesis of amino acids	2
hvu00260	Glycine, serine and threonine metabolism	2
hvu00630	Glyoxylate and dicarboxylate metabolism	2
hvu00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	4
bdi00710	Carbon fixation by Calvin cycle	3
bdi00010	Glycolysis / Gluconeogenesis	2
bdi00030	Pentose phosphate pathway	2
bdi00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	4
bdi03060	Protein export	3
bdi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	4
bra00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4
bra01230	Biosynthesis of amino acids	4
bra00520	Amino sugar and nucleotide sugar metabolism	2
bra01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	4
ppo00040	Pentose and glucuronate interconversions	3
ppo00053	Ascorbate and aldarate metabolism	3
ppo00520	Amino sugar and nucleotide sugar metabolism	3
ppo00541	Biosynthesis of various nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00480	Glutathione metabolism	2
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	3
ghi00905	Brassinosteroid biosynthesis	2
ghi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00280	Valine, leucine and isoleucine degradation	4
bna00650	Butanoate metabolism	4
bna04146	Peroxisome	4
bna00760	Nicotinate and nicotinamide metabolism	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00710	Carbon fixation by Calvin cycle	3
bna01200	Carbon metabolism	3
bna00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	2
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00514	Other types of O-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	2

Expression

Expression pattern

Entrez Gene ID^*

103627539

100284747

100283473

8076870

8055631

8055939

4338711

4336556

9271995

123091974

123054083

123144971

123441944

123427407

123411641

106865488

100824073

100835427

819082

825487

100805926

100305689

100527137

101248793

101256326

101251921

103866152

103842116

100261965

100254595

18098790

7485003

18103858

25500113

25499116

11428922

107886908

107929642

107933493

106454570

106411589

106402571

102581077

102587169

102588031

102619769

102622295

102629237

107795513

107784510

107816272

5727968

The preparation time of this page was 0.2 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	3	3	3	3	3	1	2	3	2	2	3	3	3	2	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103646129 (zma-u.5 coexpression data)

Top 50 enrichment test to 103646129 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**