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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   542038   MADS24 
 zma-r.6   542038   MADS24 
 zma-m.5   542038   MADS24 
 zma-u.5   542040   MADS31 
 sbi-r.1   8086229   MADS-box transcription factor 34 
 osa-u.5   4334141   MADS-box transcription factor 34-like 
 tae-r.2   780640   MADS-box transcription factor 34 
 tae-r.2   100136963   MADS-box transcription factor 34 
 tae-r.2   123113351   MADS-box transcription factor 34 
 bdi-r.1   100839954   MADS-box transcription factor 34-like 

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Top 50 coexpressed genes to 542038 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542038 (zma-u.5 coexpression data)

CoexMap"542038"


zmaLOC542038 | Entrez gene ID : 542038      
Species zma sbi osa tae bdi cre vvi bra ath ppo mtr hvu bna nta gma cit sly ghi sot
Paralog 4 1 1 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (124 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (246 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (663 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1355 genes)  IEA  
Protein NP_001105149.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001105149.2)
Subcellular
localization
TargetP
other 8,  mito 4  (predict for NP_001105149.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
542038
zma-r.6
for
542038
zma-m.5
for
542038
zma-u.5
for
542040
sbi-r.1
for
8086229
osa-u.5
for
4334141
tae-r.2
for
780640
tae-r.2
for
100136963
tae-r.2
for
123113351
bdi-r.1
for
100839954


Ortholog ID: 16199
Species zma zma sbi osa tae tae tae bdi
Symbol LOC542038 LOC542040 LOC8086229 LOC4334141 LOC780640 LOC100136963 LOC123113351 LOC100839954
Function* MADS24 MADS31 MADS-box transcription factor 34 MADS-box transcription factor 34-like MADS-box transcription factor 34 MADS-box transcription factor 34 MADS-box transcription factor 34 MADS-box transcription factor 34-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00230 Purine metabolism 2
osa00240 Pyrimidine metabolism 2
osa01232 Nucleotide metabolism 2
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
bdi00100 Steroid biosynthesis 2
bdi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 542038 542040 8086229 4334141 780640 100136963 123113351 100839954
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