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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   542277   nucleic acid binding protein 1 
 zma-r.6   542277   nucleic acid binding protein 1 
 zma-m.5   542277   nucleic acid binding protein 1 
 zma-u.5   100282806   uncharacterized LOC100282806 
 zma-u.5   100191381   uncharacterized LOC100191381 
 sbi-r.1   8057999   28 kDa ribonucleoprotein, chloroplastic 
 sbi-r.1   8061671   28 kDa ribonucleoprotein, chloroplastic 
 osa-u.5   4347871   28 kDa ribonucleoprotein, chloroplastic 
 osa-u.5   4346294   28 kDa ribonucleoprotein, chloroplastic 
 tae-r.2   123104863   28 kDa ribonucleoprotein, chloroplastic 
 tae-r.2   123113146   28 kDa ribonucleoprotein, chloroplastic 
 tae-r.2   123155820   31 kDa ribonucleoprotein, chloroplastic 
 hvu-r.1   123410630   28 kDa ribonucleoprotein, chloroplastic-like 
 hvu-r.1   123452051   28 kDa ribonucleoprotein, chloroplastic-like 
 bdi-r.1   100821951   28 kDa ribonucleoprotein, chloroplastic 
 bdi-r.1   100823320   28 kDa ribonucleoprotein, chloroplastic 
 ath-u.5   RBP31   31-kDa RNA binding protein 
 ath-u.5   CP31B   chloroplast RNA-binding protein 31B 
 gma-u.5   100811487   RNA recognition motif-containing protein 
 gma-u.5   100790280   31 kDa ribonucleoprotein, chloroplastic-like 
 gma-u.5   100804984   31 kDa ribonucleoprotein, chloroplastic-like 
 sly-u.5   101250878   28 kDa ribonucleoprotein, chloroplastic 
 bra-r.6   103834898   31 kDa ribonucleoprotein, chloroplastic 
 bra-r.6   103861504   31 kDa ribonucleoprotein, chloroplastic 
 bra-r.6   103862547   31 kDa ribonucleoprotein, chloroplastic 
 vvi-u.5   100257045   28 kDa ribonucleoprotein, chloroplastic 
 vvi-u.5   100266472   28 kDa ribonucleoprotein, chloroplastic 
 ppo-u.5   7457790   28 kDa ribonucleoprotein, chloroplastic 
 ppo-u.5   7484435   28 kDa ribonucleoprotein, chloroplastic 
 ppo-u.5   7467664   28 kDa ribonucleoprotein, chloroplastic 
 mtr-u.5   25489530   28 kDa ribonucleoprotein, chloroplastic 
 mtr-u.5   25493685   28 kDa ribonucleoprotein, chloroplastic 
 ghi-r.1   121219340   28 kDa ribonucleoprotein, chloroplastic 
 ghi-r.1   107953551   28 kDa ribonucleoprotein, chloroplastic 
 ghi-r.1   107949724   28 kDa ribonucleoprotein, chloroplastic 
 bna-r.1   106440781   31 kDa ribonucleoprotein, chloroplastic-like 
 bna-r.1   106427405   31 kDa ribonucleoprotein, chloroplastic 
 bna-r.1   106361316   31 kDa ribonucleoprotein, chloroplastic 
 sot-r.1   102598291   28 kDa ribonucleoprotein, chloroplastic-like 
 cit-r.1   102607837   28 kDa ribonucleoprotein, chloroplastic-like 
 nta-r.1   107790472   28 kDa ribonucleoprotein, chloroplastic 
 nta-r.1   107769683   31 kDa ribonucleoprotein, chloroplastic 
 nta-r.1   107772527   31 kDa ribonucleoprotein, chloroplastic-like 

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Top 50 coexpressed genes to 542277 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542277 (zma-u.5 coexpression data)

CoexMap"542277"


zmaLOC542277 | Entrez gene ID : 542277      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 5 2 2 3 2 2 2 3 1 3 2 3 2 3 3 1 1 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1901259 [list] [network] chloroplast rRNA processing  (20 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (153 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (346 genes)  IEA  
Protein NP_001105347.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001105347.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001105347.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
542277
zma-r.6
for
542277
zma-m.5
for
542277
zma-u.5
for
100282806
zma-u.5
for
100191381
sbi-r.1
for
8057999
sbi-r.1
for
8061671
osa-u.5
for
4347871
osa-u.5
for
4346294
tae-r.2
for
123104863
tae-r.2
for
123113146
tae-r.2
for
123155820
hvu-r.1
for
123410630
hvu-r.1
for
123452051
bdi-r.1
for
100821951
bdi-r.1
for
100823320
ath-u.5
for
RBP31
ath-u.5
for
CP31B
gma-u.5
for
100811487
gma-u.5
for
100790280
gma-u.5
for
100804984
sly-u.5
for
101250878
bra-r.6
for
103834898
bra-r.6
for
103861504
bra-r.6
for
103862547
vvi-u.5
for
100257045
vvi-u.5
for
100266472
ppo-u.5
for
7457790
ppo-u.5
for
7484435
ppo-u.5
for
7467664
mtr-u.5
for
25489530
mtr-u.5
for
25493685
ghi-r.1
for
121219340
ghi-r.1
for
107953551
ghi-r.1
for
107949724
bna-r.1
for
106440781
bna-r.1
for
106427405
bna-r.1
for
106361316
sot-r.1
for
102598291
cit-r.1
for
102607837
nta-r.1
for
107790472
nta-r.1
for
107769683
nta-r.1
for
107772527


Ortholog ID: 3364
Species zma zma zma sbi sbi osa osa tae tae tae hvu hvu bdi bdi ath ath gma gma gma sly bra bra bra vvi vvi ppo ppo ppo mtr mtr ghi ghi ghi bna bna bna sot cit nta nta nta
Symbol LOC542277 LOC100282806 LOC100191381 LOC8057999 LOC8061671 LOC4347871 LOC4346294 LOC123104863 LOC123155820 LOC100415840 LOC123410630 LOC123452051 LOC100821951 LOC100823320 RBP31 CP31B LOC100790280 LOC100804984 LOC100810381 LOC101250878 LOC103834898 LOC103861504 LOC103862547 LOC100257045 LOC100266472 LOC7457790 LOC7484435 LOC7467664 LOC25489530 LOC25493685 LOC121219340 LOC107953551 LOC107949724 LOC106427405 LOC106436939 LOC106442312 LOC102598291 LOC102607837 LOC107790472 LOC107769683 LOC107772527
Function* nucleic acid binding protein 1 uncharacterized LOC100282806 uncharacterized LOC100191381 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 31-kDa RNA binding protein chloroplast RNA-binding protein 31B 31 kDa ribonucleoprotein, chloroplastic-like 31 kDa ribonucleoprotein, chloroplastic-like RNA recognition motif (RRM) domain-containing protein 28 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic-like 31 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu00195 Photosynthesis 2
hvu00710 Carbon fixation by Calvin cycle 2
hvu01200 Carbon metabolism 2
hvu00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly03060 Protein export 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 10
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra00240 Pyrimidine metabolism 2
bra01232 Nucleotide metabolism 2
bra01240 Biosynthesis of cofactors 2
bra00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00061 Fatty acid biosynthesis 3
mtr01212 Fatty acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
mtr01240 Biosynthesis of cofactors 3
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
ghi03060 Protein export 2
ghi00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit04141 Protein processing in endoplasmic reticulum 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 542277 100282806 100191381 8057999 8061671 4347871 4346294 123104863 123155820 100415840 123410630 123452051 100821951 100823320 828579 835090 100790280 100804984 100810381 101250878 103834898 103861504 103862547 100257045 100266472 7457790 7484435 7467664 25489530 25493685 121219340 107953551 107949724 106427405 106436939 106442312 102598291 102607837 107790472 107769683 107772527
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