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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   542347   thylakoid assembly 1 
 zma-r.6   542347   thylakoid assembly 1 
 zma-m.5   542347   thylakoid assembly 1 
 zma-u.5   103648919   protein translocase subunit SECA2, chloroplastic 
 osa-u.5   4349987   protein translocase subunit SECA2, chloroplastic 
 osa-u.5   4327279   protein translocase subunit SECA1, chloroplastic 
 ath-u.5   AGY1   Albino or Glassy Yellow 1 
 ath-u.5   SECA2   Preprotein translocase SecA family protein 
 gma-u.5   100793437   protein translocase subunit SECA2, chloroplastic 
 gma-u.5   100803415   protein translocase subunit SecA, chloroplastic 
 gma-u.5   100815860   protein translocase subunit SecA, chloroplastic 
 sly-u.5   101250048   protein translocase subunit SECA1, chloroplastic 
 sly-u.5   101256051   protein translocase subunit SECA2, chloroplastic 
 vvi-u.5   100248990   protein translocase subunit SECA2, chloroplastic 
 vvi-u.5   100250268   protein translocase subunit SecA, chloroplastic 
 ppo-u.5   7467860   protein translocase subunit SECA2, chloroplastic 
 ppo-u.5   7455389   protein translocase subunit SecA, chloroplastic 
 mtr-u.5   25489702   protein translocase subunit SECA2, chloroplastic 
 mtr-u.5   11407629   protein translocase subunit SecA, chloroplastic 

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Top 50 coexpressed genes to 542347 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542347 (zma-u.5 coexpression data)

CoexMap"542347"


zmaLOC542347 | Entrez gene ID : 542347    
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 2 3 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03060 [list] [network] Protein export (81 genes)
GO BP
GO:0017038 [list] [network] protein import  (4 genes)  IEA  
GO:0006605 [list] [network] protein targeting  (99 genes)  IEA  
GO:0006886 [list] [network] intracellular protein transport  (303 genes)  IEA  
GO CC
GO:0016020 [list] [network] membrane  (3751 genes)  IEA  
GO MF
GO:0005524 [list] [network] ATP binding  (2473 genes)  IEA  
Protein XP_020405805.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_020405805.1)
Subcellular
localization
TargetP
chlo 4,  other 3  (predict for XP_020405805.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
542347

.
zma-r.6
for
542347

.
zma-m.5
for
542347

.
zma-u.5
for
103648919

.
osa-u.5
for
4349987

.
osa-u.5
for
4327279

.
ath-u.5
for
AGY1

.
ath-u.5
for
SECA2

.
gma-u.5
for
100793437

.
gma-u.5
for
100803415

.
gma-u.5
for
100815860

.
sly-u.5
for
101250048

.
sly-u.5
for
101256051

.
vvi-u.5
for
100248990

.
vvi-u.5
for
100250268

.
ppo-u.5
for
7467860

.
ppo-u.5
for
7455389

.
mtr-u.5
for
25489702

.
mtr-u.5
for
11407629

.


Ortholog ID: 3715
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AGY1 SECA2 LOC100803415 LOC100793437 LOC101250048 LOC101256051 LOC4349987 LOC4327279 LOC542347 LOC103648919 LOC103835738 LOC103858803 LOC100250268 LOC100248990 LOC7467860 LOC7455389 LOC11407629 LOC25489702 LOC123086652 LOC123069769 LOC123443566 LOC123447923 LOC107945986 LOC107949480 LOC106388784 LOC106425981 CHLRE_12g518000v5 CHLRE_12g517900v5 LOC8074328 LOC8060367 LOC102579971 LOC102584946 LOC102630213 LOC102621270 LOC100825147 LOC100841935 LOC107780874 LOC107789877
Function* Albino or Glassy Yellow 1 Preprotein translocase SecA family protein protein translocase subunit SecA, chloroplastic protein translocase subunit SECA2, chloroplastic protein translocase subunit SECA1, chloroplastic protein translocase subunit SECA2, chloroplastic protein translocase subunit SECA2, chloroplastic protein translocase subunit SECA1, chloroplastic thylakoid assembly 1 protein translocase subunit SECA2, chloroplastic protein translocase subunit SECA2, chloroplastic protein translocase subunit SECA1, chloroplastic protein translocase subunit SecA, chloroplastic protein translocase subunit SECA2, chloroplastic protein translocase subunit SECA2, chloroplastic protein translocase subunit SecA, chloroplastic protein translocase subunit SecA, chloroplastic protein translocase subunit SECA2, chloroplastic protein translocase subunit SECA2, chloroplastic protein translocase subunit SECA1, chloroplastic protein translocase subunit SECA1, chloroplastic protein translocase subunit SECA2, chloroplastic protein translocase subunit SecA, chloroplastic protein translocase subunit SECA2, chloroplastic protein translocase subunit SECA1, chloroplastic-like protein translocase subunit SECA2, chloroplastic uncharacterized protein uncharacterized protein protein translocase subunit SECA2, chloroplastic protein translocase subunit SECA1, chloroplastic protein translocase subunit SECA2, chloroplastic protein translocase subunit SECA1, chloroplastic protein translocase subunit SecA, chloroplastic protein translocase subunit SECA2, chloroplastic protein translocase subunit SECA2, chloroplastic protein translocase subunit SECA1, chloroplastic protein translocase subunit SECA1, chloroplastic protein translocase subunit SECA2, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03060 Protein export 3
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04148 Efferocytosis 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03060 Protein export 2
sly00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03060 Protein export 2
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03015 mRNA surveillance pathway 2
vvi03018 RNA degradation 2
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 4
tae04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
bna03060 Protein export 2
bna00030 Pentose phosphate pathway 2
bna00040 Pentose and glucuronate interconversions 2
bna00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
bna00240 Pyrimidine metabolism 2
bna01240 Biosynthesis of cofactors 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 4
cre03060 Protein export 2
cre00970 Aminoacyl-tRNA biosynthesis 2
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 8
cre00260 Glycine, serine and threonine metabolism 2
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cre01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi03040 Spliceosome 2
sbi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi00220 Arginine biosynthesis 2
sbi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 6
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03060 Protein export 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
nta04820 Cytoskeleton in muscle cells 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827922 838767 100803415 100793437 101250048 101256051 4349987 4327279 542347 103648919 103835738 103858803 100250268 100248990 7467860 7455389 11407629 25489702 123086652 123069769 123443566 123447923 107945986 107949480 106388784 106425981 5722632 5722633 8074328 8060367 102579971 102584946 102630213 102621270 100825147 100841935 107780874 107789877
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