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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   542759   pyruvate, orthophosphate dikinase 1 
 zma-r.6   542759   pyruvate, orthophosphate dikinase 1 
 zma-m.5   542759   pyruvate, orthophosphate dikinase 1 
 zma-u.5   103635678   pyruvate, phosphate dikinase 2-like 
 sbi-r.1   8063204   pyruvate, phosphate dikinase 2 
 sbi-r.1   110430571   pyruvate, phosphate dikinase 1, chloroplastic 
 osa-u.5   4333181   pyruvate, phosphate dikinase 2-like 
 osa-u.5   4338750   pyruvate, phosphate dikinase 1, chloroplastic-like 
 tae-r.2   123055206   pyruvate, phosphate dikinase 2 
 tae-r.2   123132411   pyruvate, phosphate dikinase 2 
 tae-r.2   123181969   pyruvate, phosphate dikinase 2 
 hvu-r.1   123441591   pyruvate, phosphate dikinase 2 
 bdi-r.1   100840523   pyruvate, phosphate dikinase 2 
 ath-u.5   PPDK   pyruvate orthophosphate dikinase 
 gma-u.5   100797319   pyruvate, phosphate dikinase, chloroplastic 
 gma-u.5   100786435   pyruvate, phosphate dikinase, chloroplastic 
 sly-u.5   101267346   pyruvate, phosphate dikinase, chloroplastic 
 bra-r.6   103870831   pyruvate, phosphate dikinase 1, chloroplastic 
 bra-r.6   103860785   pyruvate, phosphate dikinase 1, chloroplastic 
 vvi-u.5   100247690   pyruvate, phosphate dikinase, chloroplastic 
 ppo-u.5   7497997   pyruvate, phosphate dikinase, chloroplastic 
 mtr-u.5   120580162   pyruvate, phosphate dikinase 2 
 mtr-u.5   11417770   pyruvate, phosphate dikinase, chloroplastic 
 ghi-r.1   107915082   pyruvate, phosphate dikinase, chloroplastic 
 ghi-r.1   107897656   pyruvate, phosphate dikinase 2 
 bna-r.1   106380628   pyruvate, phosphate dikinase 1, chloroplastic 
 bna-r.1   106400973   pyruvate, phosphate dikinase 1, chloroplastic-like 
 bna-r.1   106440038   pyruvate, phosphate dikinase 1, chloroplastic 
 sot-r.1   102593774   pyruvate, phosphate dikinase, chloroplastic 
 cit-r.1   102627315   pyruvate, phosphate dikinase, chloroplastic 
 nta-r.1   107780718   pyruvate, phosphate dikinase, chloroplastic-like 
 nta-r.1   107776231   pyruvate, phosphate dikinase, chloroplastic 
 cre-r.1   CHLRE_17g734548v5   uncharacterized protein 
 cre-r.1   CHLRE_10g424750v5   uncharacterized protein 

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Top 50 coexpressed genes to 542759 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542759 (zma-u.5 coexpression data)

CoexMap"542759"


zmaLOC542759 | Entrez gene ID : 542759    
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 4 2 2 3 1 1 1 2 1 2 1 1 2 2 3 1 1 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma00010 [list] [network] Glycolysis / Gluconeogenesis (166 genes)
zma00620 [list] [network] Pyruvate metabolism (118 genes)
zma00710 [list] [network] Carbon fixation by Calvin cycle (108 genes)
zma01200 [list] [network] Carbon metabolism (344 genes)
GO BP
GO:0006090 [list] [network] pyruvate metabolic process  (118 genes)  IEA  
GO:0016310 [list] [network] phosphorylation  (1417 genes)  IEA  
GO CC
GO MF
GO:0050242 [list] [network] pyruvate, phosphate dikinase activity  (2 genes)  IEA  
GO:0016301 [list] [network] kinase activity  (1656 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2473 genes)  IEA  
Protein NP_001105738.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 2,  cyto_mito 1,  cyto 1  (predict for NP_001105738.2)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001105738.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
542759
zma-r.6
for
542759
zma-m.5
for
542759
zma-u.5
for
103635678
sbi-r.1
for
8063204
sbi-r.1
for
110430571
osa-u.5
for
4333181
osa-u.5
for
4338750
tae-r.2
for
123055206
tae-r.2
for
123132411
tae-r.2
for
123181969
hvu-r.1
for
123441591
bdi-r.1
for
100840523
ath-u.5
for
PPDK
gma-u.5
for
100797319
gma-u.5
for
100786435
sly-u.5
for
101267346
bra-r.6
for
103870831
bra-r.6
for
103860785
vvi-u.5
for
100247690
ppo-u.5
for
7497997
mtr-u.5
for
120580162
mtr-u.5
for
11417770
ghi-r.1
for
107915082
ghi-r.1
for
107897656
bna-r.1
for
106380628
bna-r.1
for
106400973
bna-r.1
for
106440038
sot-r.1
for
102593774
cit-r.1
for
102627315
nta-r.1
for
107780718
nta-r.1
for
107776231
cre-r.1
for
CHLRE_17g734548v5
cre-r.1
for
CHLRE_10g424750v5


Ortholog ID: 6298
Species zma zma sbi sbi osa osa tae tae tae hvu bdi ath gma gma sly bra bra vvi ppo mtr mtr ghi ghi bna bna bna sot cit nta nta cre cre
Symbol LOC542759 LOC103635678 LOC8063204 LOC110430571 LOC4333181 LOC4338750 LOC123055206 LOC123181969 LOC542924 LOC123441591 LOC100840523 PPDK LOC100797319 LOC100786435 LOC101267346 LOC103870831 LOC103860785 LOC100247690 LOC7497997 LOC120580162 LOC11417770 LOC107915082 LOC107897656 LOC106380628 LOC106440038 LOC106352550 LOC102593774 LOC102627315 LOC107780718 LOC107776231 CHLRE_17g734548v5 CHLRE_10g424750v5
Function* pyruvate, orthophosphate dikinase 1 pyruvate, phosphate dikinase 2-like pyruvate, phosphate dikinase 2 pyruvate, phosphate dikinase 1, chloroplastic pyruvate, phosphate dikinase 2-like pyruvate, phosphate dikinase 1, chloroplastic-like pyruvate, phosphate dikinase 2 pyruvate, phosphate dikinase 2 pyruvate, phosphate dikinase 1, chloroplastic pyruvate, phosphate dikinase 2 pyruvate, phosphate dikinase 2 pyruvate orthophosphate dikinase pyruvate, phosphate dikinase, chloroplastic pyruvate, phosphate dikinase, chloroplastic pyruvate, phosphate dikinase, chloroplastic pyruvate, phosphate dikinase 1, chloroplastic pyruvate, phosphate dikinase 1, chloroplastic pyruvate, phosphate dikinase, chloroplastic pyruvate, phosphate dikinase, chloroplastic pyruvate, phosphate dikinase 2 pyruvate, phosphate dikinase, chloroplastic pyruvate, phosphate dikinase, chloroplastic pyruvate, phosphate dikinase 2 pyruvate, phosphate dikinase 1, chloroplastic pyruvate, phosphate dikinase 1, chloroplastic pyruvate, phosphate dikinase 1, chloroplastic pyruvate, phosphate dikinase, chloroplastic pyruvate, phosphate dikinase, chloroplastic pyruvate, phosphate dikinase, chloroplastic-like pyruvate, phosphate dikinase, chloroplastic uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 8
zma00710 Carbon fixation by Calvin cycle 6
zma00010 Glycolysis / Gluconeogenesis 5
zma01230 Biosynthesis of amino acids 5
zma00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00710 Carbon fixation by Calvin cycle 7
zma01200 Carbon metabolism 7
zma01230 Biosynthesis of amino acids 4
zma00010 Glycolysis / Gluconeogenesis 4
zma00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00010 Glycolysis / Gluconeogenesis 6
osa00620 Pyruvate metabolism 3
osa00710 Carbon fixation by Calvin cycle 2
osa01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 3
osa04146 Peroxisome 2
osa00270 Cysteine and methionine metabolism 2
osa00543 Exopolysaccharide biosynthesis 2
osa00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 7
tae01200 Carbon metabolism 7
tae00010 Glycolysis / Gluconeogenesis 4
tae00620 Pyruvate metabolism 4
tae00220 Arginine biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 7
tae01200 Carbon metabolism 7
tae00010 Glycolysis / Gluconeogenesis 4
tae00620 Pyruvate metabolism 4
tae00220 Arginine biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 7
tae01200 Carbon metabolism 7
tae00010 Glycolysis / Gluconeogenesis 4
tae00620 Pyruvate metabolism 4
tae00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00010 Glycolysis / Gluconeogenesis 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 8
bdi00630 Glyoxylate and dicarboxylate metabolism 6
bdi00710 Carbon fixation by Calvin cycle 5
bdi00051 Fructose and mannose metabolism 3
bdi00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00270 Cysteine and methionine metabolism 3
ath00350 Tyrosine metabolism 3
ath00280 Valine, leucine and isoleucine degradation 3
ath01230 Biosynthesis of amino acids 2
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 3
gma00010 Glycolysis / Gluconeogenesis 2
gma00620 Pyruvate metabolism 2
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 4
gma00010 Glycolysis / Gluconeogenesis 3
gma00710 Carbon fixation by Calvin cycle 3
gma00620 Pyruvate metabolism 2
gma00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00620 Pyruvate metabolism 2
sly00710 Carbon fixation by Calvin cycle 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00350 Tyrosine metabolism 4
bra00360 Phenylalanine metabolism 4
bra00270 Cysteine and methionine metabolism 3
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 2
bra00010 Glycolysis / Gluconeogenesis 2
bra00620 Pyruvate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 4
vvi00710 Carbon fixation by Calvin cycle 3
vvi01240 Biosynthesis of cofactors 2
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 4
ppo01200 Carbon metabolism 4
ppo00620 Pyruvate metabolism 2
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr00970 Aminoacyl-tRNA biosynthesis 2
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03030 DNA replication 2
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 2
mtr01200 Carbon metabolism 2
mtr00061 Fatty acid biosynthesis 2
mtr00071 Fatty acid degradation 2
mtr01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 6
ghi01200 Carbon metabolism 4
ghi00190 Oxidative phosphorylation 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 5
ghi01200 Carbon metabolism 3
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00620 Pyruvate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00010 Glycolysis / Gluconeogenesis 4
bna00620 Pyruvate metabolism 4
bna00710 Carbon fixation by Calvin cycle 4
bna01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00010 Glycolysis / Gluconeogenesis 4
bna00620 Pyruvate metabolism 4
bna00710 Carbon fixation by Calvin cycle 4
bna01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00280 Valine, leucine and isoleucine degradation 6
bna01200 Carbon metabolism 6
bna00071 Fatty acid degradation 4
bna00592 alpha-Linolenic acid metabolism 4
bna01040 Biosynthesis of unsaturated fatty acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 5
sot00630 Glyoxylate and dicarboxylate metabolism 3
sot00330 Arginine and proline metabolism 2
sot00010 Glycolysis / Gluconeogenesis 2
sot00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 10
cit00710 Carbon fixation by Calvin cycle 7
cit00010 Glycolysis / Gluconeogenesis 3
cit00030 Pentose phosphate pathway 3
cit00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 2
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 2
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00620 Pyruvate metabolism 5
cre01200 Carbon metabolism 5
cre00010 Glycolysis / Gluconeogenesis 3
cre00061 Fatty acid biosynthesis 3
cre01212 Fatty acid metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 542759 103635678 8063204 110430571 4333181 4338750 123055206 123181969 542924 123441591 100840523 827226 100797319 100786435 101267346 103870831 103860785 100247690 7497997 120580162 11417770 107915082 107897656 106380628 106440038 106352550 102593774 102627315 107780718 107776231 5718623 5728204
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