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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   606425   senescence-inducible chloroplast stay-green protein 1 
 zma-r.6   606425   senescence-inducible chloroplast stay-green protein 1 
 zma-u.5   100192013   Protein STAY-GREEN LIKE chloroplastic 
 zma-u.5   606426   senescence-inducible chloroplast stay-green protein 2 
 sbi-r.1   8054896   protein STAY-GREEN, chloroplastic 
 sbi-r.1   8073690   protein STAY-GREEN LIKE, chloroplastic 
 osa-u.5   112938752   protein STAY-GREEN LIKE, chloroplastic 
 osa-u.5   4347672   protein STAY-GREEN, chloroplastic-like 
 tae-r.2   123104541   protein STAY-GREEN, chloroplastic 
 tae-r.2   123055433   protein STAY-GREEN LIKE, chloroplastic 
 tae-r.2   123112817   protein STAY-GREEN, chloroplastic 
 hvu-r.1   123400066   protein STAY-GREEN, chloroplastic-like 
 bdi-r.1   100837300   protein STAY-GREEN, chloroplastic 
 bdi-r.1   100822302   protein STAY-GREEN LIKE, chloroplastic 
 ath-u.5   AT4G11910   STAY-GREEN-like protein 
 ath-u.5   NYE1   non-yellowing 1 
 gma-u.5   100792871   magnesium dechelatase SGRL, chloroplastic 
 gma-u.5   100795181   protein SGR1-like 
 sly-u.5   101258237   protein STAY-GREEN homolog, chloroplastic-like 
 sly-u.5   SGR1   senescence-inducible chloroplast stay-green protein 1 
 sly-u.5   101252980   magnesium dechelatase SGRL, chloroplastic 
 bra-r.6   103834271   magnesium dechelatase SGR1, chloroplastic 
 bra-r.6   103858612   magnesium dechelatase SGR2, chloroplastic 
 vvi-u.5   100265112   protein STAY-GREEN homolog, chloroplastic 
 vvi-u.5   100252353   magnesium dechelatase SGRL, chloroplastic 
 ppo-u.5   7478087   protein STAY-GREEN homolog, chloroplastic 
 ppo-u.5   18099608   magnesium dechelatase SGRL, chloroplastic 
 mtr-u.5   11441009   protein STAY-GREEN, chloroplastic 
 mtr-u.5   25489732   magnesium dechelatase SGRL, chloroplastic 
 ghi-r.1   107951459   magnesium dechelatase SGRL, chloroplastic 
 ghi-r.1   107963689   protein STAY-GREEN homolog, chloroplastic 
 ghi-r.1   107929203   protein STAY-GREEN homolog, chloroplastic 
 bna-r.1   106388569   protein STAY-GREEN 2, chloroplastic-like 
 bna-r.1   106438786   magnesium dechelatase SGR2, chloroplastic 
 bna-r.1   111197916   magnesium dechelatase SGR1, chloroplastic 
 sot-r.1   102597935   protein STAY-GREEN, chloroplastic-like 
 sot-r.1   102586926   protein STAY-GREEN LIKE, chloroplastic 
 sot-r.1   102599319   protein STAY-GREEN, chloroplastic-like 
 cit-r.1   102625350   protein STAY-GREEN 1, chloroplastic 
 cit-r.1   102607042   magnesium dechelatase SGRL, chloroplastic 
 nta-r.1   107824323   protein STAY-GREEN homolog, chloroplastic 
 nta-r.1   107819767   protein STAY-GREEN homolog, chloroplastic 
 cre-r.1   CHLRE_12g487500v5   uncharacterized protein 

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Top 50 coexpressed genes to 606425 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 606425 (zma-u.5 coexpression data)

CoexMap"606425"


zmaLOC606425 | Entrez gene ID : 606425      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 4 2 2 3 1 2 2 2 3 2 2 2 2 3 3 3 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma00860 [list] [network] Porphyrin metabolism (67 genes)
GO BP
GO:0015996 [list] [network] chlorophyll catabolic process  (9 genes)  IEA  
GO CC
GO MF
Protein NP_001105770.2 [sequence] [blastp]
XP_035820927.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  cyto 1,  mito 1  (predict for NP_001105770.2)
chlo 5,  mito 1,  nucl 1,  plas 1,  vacu 1,  E.R. 1,  pero 1,  cyto_mito 1,  nucl_plas 1,  E.R._vacu 1,  E.R._plas 1  (predict for XP_035820927.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001105770.2)
chlo 8  (predict for XP_035820927.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
606425
zma-r.6
for
606425
zma-u.5
for
100192013
zma-u.5
for
606426
sbi-r.1
for
8054896
sbi-r.1
for
8073690
osa-u.5
for
112938752
osa-u.5
for
4347672
tae-r.2
for
123104541
tae-r.2
for
123055433
tae-r.2
for
123112817
hvu-r.1
for
123400066
bdi-r.1
for
100837300
bdi-r.1
for
100822302
ath-u.5
for
AT4G11910
ath-u.5
for
NYE1
gma-u.5
for
100792871
gma-u.5
for
100795181
sly-u.5
for
101258237
sly-u.5
for
SGR1
sly-u.5
for
101252980
bra-r.6
for
103834271
bra-r.6
for
103858612
vvi-u.5
for
100265112
vvi-u.5
for
100252353
ppo-u.5
for
7478087
ppo-u.5
for
18099608
mtr-u.5
for
11441009
mtr-u.5
for
25489732
ghi-r.1
for
107951459
ghi-r.1
for
107963689
ghi-r.1
for
107929203
bna-r.1
for
106388569
bna-r.1
for
106438786
bna-r.1
for
111197916
sot-r.1
for
102597935
sot-r.1
for
102586926
sot-r.1
for
102599319
cit-r.1
for
102625350
cit-r.1
for
102607042
nta-r.1
for
107824323
nta-r.1
for
107819767
cre-r.1
for
CHLRE_12g487500v5


Ortholog ID: 1713
Species zma zma zma sbi sbi osa osa tae tae tae hvu bdi bdi ath ath gma gma sly sly sly bra bra vvi vvi ppo ppo ppo mtr mtr ghi ghi ghi bna bna bna sot sot sot cit cit nta nta cre
Symbol LOC606425 LOC100192013 LOC606426 LOC8054896 LOC8073690 LOC112938752 LOC4347672 LOC123104541 LOC123055433 LOC123175465 LOC123400066 LOC100837300 LOC100822302 AT4G11910 AT1G44000 LOC100792871 LOC100795181 LOC101258237 SGR1 LOC101252980 LOC103834271 LOC103861346 LOC100265112 LOC100252353 LOC7478087 LOC18099608 LOC7465829 LOC11441009 LOC25489732 LOC107951459 LOC107963689 LOC107929203 LOC106375753 LOC106405908 LOC106440469 LOC102597935 LOC102586926 LOC102599319 LOC102625350 LOC102607042 LOC107763781 LOC107804241 CHLRE_12g487500v5
Function* senescence-inducible chloroplast stay-green protein 1 Protein STAY-GREEN LIKE chloroplastic senescence-inducible chloroplast stay-green protein 2 protein STAY-GREEN, chloroplastic protein STAY-GREEN LIKE, chloroplastic protein STAY-GREEN LIKE, chloroplastic protein STAY-GREEN, chloroplastic-like protein STAY-GREEN, chloroplastic protein STAY-GREEN LIKE, chloroplastic protein STAY-GREEN LIKE, chloroplastic protein STAY-GREEN, chloroplastic-like protein STAY-GREEN, chloroplastic protein STAY-GREEN LIKE, chloroplastic STAY-GREEN-like protein STAY-GREEN-like protein magnesium dechelatase SGRL, chloroplastic protein SGR1-like protein STAY-GREEN homolog, chloroplastic-like senescence-inducible chloroplast stay-green protein 1 magnesium dechelatase SGRL, chloroplastic magnesium dechelatase SGR1, chloroplastic magnesium dechelatase SGR1, chloroplastic protein STAY-GREEN homolog, chloroplastic magnesium dechelatase SGRL, chloroplastic protein STAY-GREEN homolog, chloroplastic magnesium dechelatase SGRL, chloroplastic protein STAY-GREEN homolog, chloroplastic protein STAY-GREEN, chloroplastic magnesium dechelatase SGRL, chloroplastic magnesium dechelatase SGRL, chloroplastic protein STAY-GREEN homolog, chloroplastic protein STAY-GREEN homolog, chloroplastic magnesium dechelatase SGR1, chloroplastic-like magnesium dechelatase SGR1, chloroplastic magnesium dechelatase SGR1, chloroplastic protein STAY-GREEN, chloroplastic-like protein STAY-GREEN LIKE, chloroplastic protein STAY-GREEN, chloroplastic-like protein STAY-GREEN 1, chloroplastic magnesium dechelatase SGRL, chloroplastic magnesium dechelatase SGRL, chloroplastic magnesium dechelatase SGRL, chloroplastic-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 5
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 4
bdi00196 Photosynthesis - antenna proteins 2
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 4
ath00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 10
gma00860 Porphyrin metabolism 2
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 4
gma01240 Biosynthesis of cofactors 3
gma00195 Photosynthesis 2
gma00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 2
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 8
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00410 beta-Alanine metabolism 5
bra00770 Pantothenate and CoA biosynthesis 4
bra00240 Pyrimidine metabolism 3
bra00071 Fatty acid degradation 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 4
vvi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 4
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 4
ppo04016 MAPK signaling pathway - plant 3
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00196 Photosynthesis - antenna proteins 4
mtr00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 6
ghi00190 Oxidative phosphorylation 2
ghi00480 Glutathione metabolism 2
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 8
bna04016 MAPK signaling pathway - plant 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 7
bna04016 MAPK signaling pathway - plant 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 10
bna04016 MAPK signaling pathway - plant 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 10
sot00196 Photosynthesis - antenna proteins 6
sot00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 8
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 8
nta00900 Terpenoid backbone biosynthesis 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta00670 One carbon pool by folate 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 606425 100192013 606426 8054896 8073690 112938752 4347672 123104541 123055433 123175465 123400066 100837300 100822302 826798 841000 100792871 100795181 101258237 778212 101252980 103834271 103861346 100265112 100252353 7478087 18099608 7465829 11441009 25489732 107951459 107963689 107929203 106375753 106405908 106440469 102597935 102586926 102599319 102625350 102607042 107763781 107804241 5716647
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