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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   606458   knotted related homeobox 8 
 zma-r.6   606458   knotted related homeobox 8 
 zma-u.5   100193050   uncharacterized LOC100193050 
 zma-u.5   100283504   KNOX1 domain containing protein 
 zma-u.5   100283277   homeobox protein rough sheath 1 
 sbi-r.1   8054187   homeobox protein knotted-1-like 4 
 sbi-r.1   8059967   homeobox protein knotted-1-like 7 
 sbi-r.1   8060322   homeobox protein knotted-1-like 1 
 osa-u.5   4342320   homeobox protein knotted-1-like 12 
 tae-r.2   123113454   homeobox protein rough sheath 1 
 hvu-r.1   123415825   homeobox protein knotted-1-like 10 
 bdi-r.1   100833629   homeobox protein knotted-1-like 4 
 bdi-r.1   100832589   homeobox protein rough sheath 1 
 ath-u.5   STM   KNOX/ELK homeobox transcription factor 
 ath-u.5   KNAT6   homeobox protein knotted-1-like 6 
 ath-u.5   KNAT1   homeobox knotted-like protein 
 gma-u.5   100786114   homeobox protein knotted-1-like 10 
 gma-u.5   100803730   homeobox protein knotted-1-like 6 
 sly-u.5   KN4   knotted homeodomain protein 4 
 sly-u.5   T6   class I knotted-like homeodomain protein 
 sly-u.5   KN1   homeotic protein knotted-1 
 bra-r.6   103840767   homeobox protein knotted-1-like 6 
 bra-r.6   103858468   homeobox protein knotted-1-like 1 
 bra-r.6   STM   homeobox protein SHOOT MERISTEMLESS 
 vvi-u.5   100264808   homeobox protein knotted-1-like 1 
 ppo-u.5   18103792   homeobox protein knotted-1-like 2 
 ppo-u.5   7478899   homeobox protein knotted-1-like 1 
 ppo-u.5   7484545   homeobox protein SBH1 
 mtr-u.5   25486232   homeobox protein SBH1 
 mtr-u.5   25482021   homeotic protein knotted-1 
 ghi-r.1   107933765   homeobox protein knotted-1-like 1 
 ghi-r.1   107935395   homeobox protein SBH1 
 ghi-r.1   107930537   homeobox protein knotted-1-like 2 
 bna-r.1   106414253   homeobox protein knotted-1-like 6 
 bna-r.1   106420956   homeobox protein knotted-1-like 6 
 bna-r.1   106434220   homeobox protein knotted-1-like 6 
 sot-r.1   102601860   homeotic protein knotted-1 
 sot-r.1   POTH15   homeobox protein knotted-1-like LET6-like 
 cit-r.1   102614106   homeobox protein SHOOT MERISTEMLESS 
 cit-r.1   102622339   homeobox protein knotted-1-like 1 
 cit-r.1   102628261   homeobox protein knotted-1-like 6 
 nta-r.1   107826559   homeobox protein knotted-1-like LET6 

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Top 50 coexpressed genes to 606458 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 606458 (zma-u.5 coexpression data)

CoexMap"606458"


zmaLOC606458 | Entrez gene ID : 606458      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 5 3 1 1 1 2 3 2 3 3 1 3 2 3 3 2 3 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1994 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (224 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2288 genes)  IEA  
Protein NP_001306699.1 [sequence] [blastp]
NP_001358977.1 [sequence] [blastp]
NP_001358978.1 [sequence] [blastp]
XP_035817115.1 [sequence] [blastp]
XP_035817116.1 [sequence] [blastp]
XP_035817117.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001306699.1)
chlo 5,  nucl 4  (predict for NP_001358977.1)
nucl 10  (predict for NP_001358978.1)
nucl 9,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_035817115.1)
nucl 10  (predict for XP_035817116.1)
nucl 5,  chlo 4  (predict for XP_035817117.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001306699.1)
chlo 3,  other 3  (predict for NP_001358977.1)
chlo 8  (predict for NP_001358978.1)
other 5,  mito 3  (predict for XP_035817115.1)
chlo 8  (predict for XP_035817116.1)
chlo 3,  other 3  (predict for XP_035817117.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
606458
zma-r.6
for
606458
zma-u.5
for
100193050
zma-u.5
for
100283504
zma-u.5
for
100283277
sbi-r.1
for
8054187
sbi-r.1
for
8059967
sbi-r.1
for
8060322
osa-u.5
for
4342320
tae-r.2
for
123113454
hvu-r.1
for
123415825
bdi-r.1
for
100833629
bdi-r.1
for
100832589
ath-u.5
for
STM
ath-u.5
for
KNAT6
ath-u.5
for
KNAT1
gma-u.5
for
100786114
gma-u.5
for
100803730
sly-u.5
for
KN4
sly-u.5
for
T6
sly-u.5
for
KN1
bra-r.6
for
103840767
bra-r.6
for
103858468
bra-r.6
for
STM
vvi-u.5
for
100264808
ppo-u.5
for
18103792
ppo-u.5
for
7478899
ppo-u.5
for
7484545
mtr-u.5
for
25486232
mtr-u.5
for
25482021
ghi-r.1
for
107933765
ghi-r.1
for
107935395
ghi-r.1
for
107930537
bna-r.1
for
106414253
bna-r.1
for
106420956
bna-r.1
for
106434220
sot-r.1
for
102601860
sot-r.1
for
POTH15
cit-r.1
for
102614106
cit-r.1
for
102622339
cit-r.1
for
102628261
nta-r.1
for
107826559


Ortholog ID: 275
Species zma zma zma sbi sbi sbi osa osa tae tae tae bdi bdi ath ath ath gma gma gma sly sly sly bra bra bra vvi vvi ppo ppo mtr mtr mtr ghi ghi ghi bna bna sot sot cit cit cit nta nta
Symbol LOC541961 LOC542487 LOC541960 LOC8059967 LOC8059916 LOC8071273 LOC4342320 LOC4337701 LOC123180293 LOC123180294 LOC123090945 LOC100832589 LOC100839205 STM KNAT6 KNAT2 LOC100786454 LOC100800822 LOC100803095 T6 KN1 TKn3 LOC103858468 LOC103852657 LOC103835665 LOC100255834 LOC100248152 LOC7478899 LOC112327500 LOC25482021 LOC11415594 LOC11406488 LOC107924993 LOC107938311 LOC107895047 LOC106404904 LOC125600843 LOC102601860 POTH15 LOC102614106 LOC102609444 LOC102615394 LOC107781949 LOC107817797
Function* knotted related homeobox 5 liguleless 3 liguleless 4 homeobox protein knotted-1-like 7 homeobox protein rough sheath 1 homeobox protein knotted-1-like 10 homeobox protein knotted-1-like 12 homeobox protein knotted-1-like 10 homeobox protein knotted-1-like 10 homeobox protein knotted-1-like 10 homeobox protein KNOX3 homeobox protein rough sheath 1 homeobox protein knotted-1-like 10 KNOX/ELK homeobox transcription factor homeobox protein knotted-1-like 6 homeobox knotted-like protein homeobox protein knotted-1-like 6 homeotic protein knotted-1 homeobox protein knotted-1-like class I knotted-like homeodomain protein homeotic protein knotted-1 knotted 3 protein homeobox protein knotted-1-like 1 homeobox protein knotted-1-like 2 homeobox protein knotted-1-like 6 homeobox protein knotted-1-like 2 homeobox protein knotted-1-like LET6 homeobox protein knotted-1-like 1 homeobox protein knotted-1-like 1 homeotic protein knotted-1 homeobox protein knotted-1-like 6 homeobox protein knotted-1-like 1 homeobox protein SBH1 homeobox protein knotted-1-like 2 homeobox protein knotted-1-like 1 homeobox protein knotted-1-like 2 homeobox protein knotted-1-like 6 homeotic protein knotted-1 homeobox protein knotted-1-like LET6-like homeobox protein SHOOT MERISTEMLESS homeobox protein knotted-1-like LET6 homeotic protein knotted-1 homeobox protein knotted-1-like 6 homeobox protein knotted-1-like 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00430 Taurine and hypotaurine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00010 Glycolysis / Gluconeogenesis 2
sot00071 Fatty acid degradation 2
sot00350 Tyrosine metabolism 2
sot00620 Pyruvate metabolism 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 5
cit00941 Flavonoid biosynthesis 2
cit00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 541961 542487 541960 8059967 8059916 8071273 4342320 4337701 123180293 123180294 123090945 100832589 100839205 842534 838946 843388 100786454 100800822 100803095 543520 544007 544029 103858468 103852657 103835665 100255834 100248152 7478899 112327500 25482021 11415594 11406488 107924993 107938311 107895047 106404904 125600843 102601860 102581859 102614106 102609444 102615394 107781949 107817797
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