ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100830765	SAP domain containing protein
bdi-r.1	100828438	apoptotic chromatin condensation inducer in the nucleus
tae-r.2	123044136	uncharacterized LOC123044136
tae-r.2	123187881	apoptotic chromatin condensation inducer in the nucleus
tae-r.2	123097449	titin homolog
hvu-r.1	123429672	apoptotic chromatin condensation inducer in the nucleus-like
hvu-r.1	123448495	apoptotic chromatin condensation inducer in the nucleus
osa-u.5	4332988	uncharacterized LOC4332988
osa-u.5	4343967	uncharacterized LOC4343967
zma-u.5	103635858	formin-like protein 5
zma-u.5	100502129	SAP domain-containing protein
zma-u.5	100381870	Putative SAP DNA-binding domain family protein
sbi-r.1	110431408	formin-like protein 5
ath-u.5	AT4G39680	SAP domain-containing protein
gma-u.5	100816245	apoptotic chromatin condensation inducer in the nucleus
gma-u.5	100786288	apoptotic chromatin condensation inducer in the nucleus
sly-u.5	101245055	putative DNA/RNA binding domain-containing protein
bra-r.6	103851344	apoptotic chromatin condensation inducer in the nucleus
bra-r.6	103835104	apoptotic chromatin condensation inducer in the nucleus
vvi-u.5	100248897	uncharacterized LOC100248897
vvi-u.5	100252593	uncharacterized LOC100252593
ppo-u.5	7456930	uncharacterized LOC7456930
ppo-u.5	7477106	uncharacterized LOC7477106
mtr-u.5	11439947	actin cytoskeleton-regulatory complex protein PAN1
mtr-u.5	11408942	formin-like protein 5
ghi-r.1	107951672	apoptotic chromatin condensation inducer in the nucleus
ghi-r.1	107950386	apoptotic chromatin condensation inducer in the nucleus
ghi-r.1	107950385	apoptotic chromatin condensation inducer in the nucleus
bna-r.1	125577105	apoptotic chromatin condensation inducer in the nucleus-like
bna-r.1	106439157	apoptotic chromatin condensation inducer in the nucleus-like
bna-r.1	106363140	apoptotic chromatin condensation inducer in the nucleus
sot-r.1	102581657	apoptotic chromatin condensation inducer in the nucleus-like
sot-r.1	102582659	apoptotic chromatin condensation inducer in the nucleus-like
cit-r.1	102612499	uncharacterized LOC102612499
nta-r.1	107825767	uncharacterized LOC107825767
nta-r.1	107780879	uncharacterized LOC107780879
nta-r.1	107787584	uncharacterized LOC107787584
cre-r.1	CHLRE_03g204950v5	uncharacterized protein

Top 50 coexpressed genes to 100830765 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100830765 (bdi-r.1 coexpression data)

CoexMap"100830765"

[Cytoscape]

Annotation

functional annotation

KEGG

bdi03013 [list] [network] Nucleocytoplasmic transport (114 genes)

bdi03015 [list] [network] mRNA surveillance pathway (130 genes)

bdi03040 [list] [network] Spliceosome (282 genes)

GO BP

GO CC

GO MF

GO:0003676 [list] [network] nucleic acid binding

(3313 genes)

IEA

Protein

XP_003557810.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 4, chlo 1, plas 1

(predict for XP_003557810.1)

Subcellular
localization
TargetP

other 8

(predict for XP_003557810.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100830765	bdi-r.1 for 100828438	tae-r.2 for 123044136	tae-r.2 for 123187881	tae-r.2 for 123097449	hvu-r.1 for 123429672	hvu-r.1 for 123448495	osa-u.5 for 4332988	osa-u.5 for 4343967	zma-u.5 for 103635858	zma-u.5 for 100502129	zma-u.5 for 100381870	sbi-r.1 for 110431408	ath-u.5 for AT4G39680	gma-u.5 for 100816245	gma-u.5 for 100786288	sly-u.5 for 101245055	bra-r.6 for 103851344	bra-r.6 for 103835104	vvi-u.5 for 100248897	vvi-u.5 for 100252593	ppo-u.5 for 7456930	ppo-u.5 for 7477106	mtr-u.5 for 11439947	mtr-u.5 for 11408942	ghi-r.1 for 107951672	ghi-r.1 for 107950386	ghi-r.1 for 107950385	bna-r.1 for 125577105	bna-r.1 for 106439157	bna-r.1 for 106363140	sot-r.1 for 102581657	sot-r.1 for 102582659	cit-r.1 for 102612499	nta-r.1 for 107825767	nta-r.1 for 107780879	nta-r.1 for 107787584	cre-r.1 for CHLRE_03g204950v5

Ortholog

Ortholog ID: 4116

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

SAP domain containing protein

apoptotic chromatin condensation inducer in the nucleus

uncharacterized LOC123044136

apoptotic chromatin condensation inducer in the nucleus

titin homolog

apoptotic chromatin condensation inducer in the nucleus-like

apoptotic chromatin condensation inducer in the nucleus

uncharacterized LOC4332988

uncharacterized LOC4343967

formin-like protein 5

SAP domain-containing protein

Putative SAP DNA-binding domain family protein

formin-like protein 5

SAP domain-containing protein

apoptotic chromatin condensation inducer in the nucleus

putative DNA/RNA binding domain-containing protein

apoptotic chromatin condensation inducer in the nucleus

uncharacterized LOC100248897

uncharacterized LOC100252593

uncharacterized LOC7456930

uncharacterized LOC7477106

actin cytoskeleton-regulatory complex protein PAN1

formin-like protein 5

apoptotic chromatin condensation inducer in the nucleus

apoptotic chromatin condensation inducer in the nucleus-like

apoptotic chromatin condensation inducer in the nucleus

apoptotic chromatin condensation inducer in the nucleus-like

uncharacterized LOC102612499

uncharacterized LOC107825767

uncharacterized LOC107780879

uncharacterized LOC107787584

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	7
bdi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae03040	Spliceosome	3
tae03082	ATP-dependent chromatin remodeling	3
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03440	Homologous recombination	3
tae03050	Proteasome	3
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	4
tae03013	Nucleocytoplasmic transport	3
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	4
hvu03013	Nucleocytoplasmic transport	3
hvu03440	Homologous recombination	3
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	2
hvu03013	Nucleocytoplasmic transport	2
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2
zma03015	mRNA surveillance pathway	2
zma03040	Spliceosome	2
zma00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2
zma03015	mRNA surveillance pathway	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00970	Aminoacyl-tRNA biosynthesis	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma03015	mRNA surveillance pathway	3
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	3
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00561	Glycerolipid metabolism	2
bra00564	Glycerophospholipid metabolism	2
bra03013	Nucleocytoplasmic transport	2
bra03015	mRNA surveillance pathway	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3
bra03013	Nucleocytoplasmic transport	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	5
ppo03013	Nucleocytoplasmic transport	3
ppo03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	8
ppo03013	Nucleocytoplasmic transport	4
ppo03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	2
mtr00790	Folate biosynthesis	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	3
mtr03018	RNA degradation	2
mtr03013	Nucleocytoplasmic transport	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	4
ghi03015	mRNA surveillance pathway	4
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	4
ghi03015	mRNA surveillance pathway	4
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	4
ghi03015	mRNA surveillance pathway	4
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	5
bna03013	Nucleocytoplasmic transport	4
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4
bna03015	mRNA surveillance pathway	4
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4
bna03015	mRNA surveillance pathway	4
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	3
sot03040	Spliceosome	3
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot03013	Nucleocytoplasmic transport	2
sot03015	mRNA surveillance pathway	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	5
cit03013	Nucleocytoplasmic transport	3
cit03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	3
nta03015	mRNA surveillance pathway	3
nta03040	Spliceosome	3
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	4
nta03013	Nucleocytoplasmic transport	3
nta03040	Spliceosome	3
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	4
nta03015	mRNA surveillance pathway	4
nta03040	Spliceosome	3
nta00500	Starch and sucrose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

100830765

100828438

123044136

123187881

123097449

123429672

123448495

4332988

4343967

103635858

100502129

100381870

110431408

830123

100816245

100786288

101245055

103851344

103835104

100248897

100252593

7456930

7477106

11439947

11408942

107951672

107950386

107950385

125577105

106363140

106361360

102581657

102582659

102612499

107825767

107780879

107787584

66053035

The preparation time of this page was 0.1 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	2	2	3	1	1	2	1	2	2	2	2	3	3	2	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100830765 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100830765 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**