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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100832556   THO complex subunit 5B 
 tae-r.2   123138448   THO complex subunit 5A 
 tae-r.2   123128578   THO complex subunit 5A 
 tae-r.2   123145697   THO complex subunit 5A 
 hvu-r.1   123404583   THO complex subunit 5A 
 osa-u.5   4330841   THO complex subunit 5A 
 zma-u.5   100191475   THO complex subunit 5B 
 sbi-r.1   8078925   THO complex subunit 5A 
 ath-u.5   THO5   THO complex, subunit 5 
 ath-u.5   THO5   THO complex, subunit 5 
 gma-u.5   100781588   THO complex subunit 5B 
 gma-u.5   100813001   THO complex subunit 5B 
 gma-u.5   100816115   THO complex subunit 5A 
 sly-u.5   101252484   THO complex subunit 5A 
 bra-r.6   103848368   THO complex subunit 5A 
 bra-r.6   103828006   THO complex subunit 5B 
 vvi-u.5   100242063   THO complex subunit 5B 
 ppo-u.5   7464925   THO complex subunit 5B 
 mtr-u.5   11433389   THO complex subunit 5A 
 ghi-r.1   107958125   THO complex subunit 5B 
 ghi-r.1   107905576   THO complex subunit 5B 
 bna-r.1   106422578   THO complex subunit 5A 
 bna-r.1   111201510   THO complex subunit 5A 
 bna-r.1   106349537   THO complex subunit 5B 
 sot-r.1   102594687   THO complex subunit 5A 
 cit-r.1   102609464   THO complex subunit 5A-like 
 nta-r.1   107824388   THO complex subunit 5B 
 nta-r.1   107794354   THO complex subunit 5B 
 cre-r.1   CHLRE_17g705550v5   uncharacterized protein 

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Top 50 coexpressed genes to 100832556 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100832556 (bdi-r.1 coexpression data)

CoexMap"100832556"


bdiLOC100832556 | Entrez gene ID : 100832556      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 1 1 1 2 3 1 2 1 1 1 2 3 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi03013 [list] [network] Nucleocytoplasmic transport (114 genes)
bdi03040 [list] [network] Spliceosome (282 genes)
GO BP
GO:0032786 [list] [network] positive regulation of DNA-templated transcription, elongation  (30 genes)  IEA  
GO:0006406 [list] [network] mRNA export from nucleus  (33 genes)  IEA  
GO CC
GO:0000445 [list] [network] THO complex part of transcription export complex  (7 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (271 genes)  IEA  
Protein XP_003570564.1 [sequence] [blastp]
XP_010236072.1 [sequence] [blastp]
XP_010236073.1 [sequence] [blastp]
XP_010236074.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 4,  nucl_plas 3  (predict for XP_003570564.1)
nucl 6,  nucl_plas 4,  cyto 3  (predict for XP_010236072.1)
cyto 4,  nucl 3,  nucl_plas 3,  chlo 1,  plas 1  (predict for XP_010236073.1)
cyto 4,  nucl_plas 2,  nucl 2,  cyto_pero 2,  cyto_E.R. 2  (predict for XP_010236074.1)
Subcellular
localization
TargetP
chlo 5,  other 5  (predict for XP_003570564.1)
chlo 5,  other 5  (predict for XP_010236072.1)
chlo 5,  other 5  (predict for XP_010236073.1)
chlo 5,  other 5  (predict for XP_010236074.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100832556
tae-r.2
for
123138448
tae-r.2
for
123128578
tae-r.2
for
123145697
hvu-r.1
for
123404583
osa-u.5
for
4330841
zma-u.5
for
100191475
sbi-r.1
for
8078925
ath-u.5
for
THO5
ath-u.5
for
THO5
gma-u.5
for
100781588
gma-u.5
for
100813001
gma-u.5
for
100816115
sly-u.5
for
101252484
bra-r.6
for
103848368
bra-r.6
for
103828006
vvi-u.5
for
100242063
ppo-u.5
for
7464925
mtr-u.5
for
11433389
ghi-r.1
for
107958125
ghi-r.1
for
107905576
bna-r.1
for
106422578
bna-r.1
for
111201510
bna-r.1
for
106349537
sot-r.1
for
102594687
cit-r.1
for
102609464
nta-r.1
for
107824388
nta-r.1
for
107794354
cre-r.1
for
CHLRE_17g705550v5


Ortholog ID: 7363
Species bdi tae tae tae hvu osa zma sbi ath ath gma gma gma sly bra bra vvi ppo mtr ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC100832556 LOC123138448 LOC123128578 LOC123145697 LOC123404583 LOC4330841 LOC100191475 LOC8078925 THO5 THO5 LOC100781588 LOC100813001 LOC100775509 LOC101252484 LOC103848368 LOC103828006 LOC100242063 LOC7464925 LOC11433389 LOC107958125 LOC107905576 LOC106422578 LOC111201510 LOC106349537 LOC102594687 LOC102609464 LOC107824388 LOC107794354 CHLRE_17g705550v5
Function* THO complex subunit 5B THO complex subunit 5A THO complex subunit 5A THO complex subunit 5A THO complex subunit 5A THO complex subunit 5A THO complex subunit 5B THO complex subunit 5A THO complex, subunit 5 THO complex, subunit 5 THO complex subunit 5B THO complex subunit 5B THO complex subunit 5A THO complex subunit 5A THO complex subunit 5A THO complex subunit 5B THO complex subunit 5B THO complex subunit 5B THO complex subunit 5A THO complex subunit 5B THO complex subunit 5B THO complex subunit 5A THO complex subunit 5A THO complex subunit 5B THO complex subunit 5A THO complex subunit 5A-like THO complex subunit 5B THO complex subunit 5B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03013 Nucleocytoplasmic transport 2
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu04120 Ubiquitin mediated proteolysis 2
hvu04141 Protein processing in endoplasmic reticulum 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 7
sbi00510 N-Glycan biosynthesis 6
sbi00513 Various types of N-glycan biosynthesis 6
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 4
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
gma04144 Endocytosis 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00020 Citrate cycle (TCA cycle) 4
sly01200 Carbon metabolism 4
sly00640 Propanoate metabolism 3
sly01210 2-Oxocarboxylic acid metabolism 3
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03040 Spliceosome 3
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 5
mtr03082 ATP-dependent chromatin remodeling 2
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03040 Spliceosome 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 2
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100832556 123138448 123128578 123145697 123404583 4330841 100191475 8078925 834304 841093 100781588 100813001 100775509 101252484 103848368 103828006 100242063 7464925 11433389 107958125 107905576 106422578 111201510 106349537 102594687 102609464 107824388 107794354 5717216
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