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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100838181   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 tae-r.2   123078870   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 tae-r.2   123070424   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 tae-r.2   123061766   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 hvu-r.1   123444224   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 osa-u.5   112937372   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like 
 osa-u.5   4324255   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 zma-u.5   100276635   uncharacterized LOC100276635 
 zma-u.5   100273331   Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 sbi-r.1   8059157   uncharacterized LOC8059157 
 ath-u.5   PTAC7   plastid transcriptionally active7 
 gma-u.5   100783539   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like 
 gma-u.5   100527868   uncharacterized LOC100527868 
 sly-u.5   101262600   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 bra-r.6   103874300   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 vvi-u.5   100244197   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 ppo-u.5   7464533   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 mtr-u.5   25491129   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 ghi-r.1   107929551   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 bna-r.1   106415415   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 bna-r.1   106348266   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 sot-r.1   102596113   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 cit-r.1   102612330   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 
 nta-r.1   107760362   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like 
 nta-r.1   107767271   protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 

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Top 50 coexpressed genes to 100838181 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100838181 (bdi-r.1 coexpression data)

CoexMap"100838181"


bdiLOC100838181 | Entrez gene ID : 100838181      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 2 2 1 1 2 1 1 1 1 1 1 2 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042793 [list] [network] plastid transcription  (5 genes)  IEA  
GO CC
GO:0000427 [list] [network] plastid-encoded plastid RNA polymerase complex  (4 genes)  IEA  
GO MF
Protein XP_003569646.1 [sequence] [blastp]
XP_010232205.1 [sequence] [blastp]
XP_010232208.1 [sequence] [blastp]
XP_010232210.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 3  (predict for XP_003569646.1)
chlo 6,  nucl 3  (predict for XP_010232205.1)
chlo 8,  nucl 1  (predict for XP_010232208.1)
chlo 8,  nucl 1  (predict for XP_010232210.1)
Subcellular
localization
TargetP
mito 2  (predict for XP_003569646.1)
mito 2  (predict for XP_010232205.1)
chlo 2  (predict for XP_010232208.1)
chlo 2  (predict for XP_010232210.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100838181
tae-r.2
for
123078870
tae-r.2
for
123070424
tae-r.2
for
123061766
hvu-r.1
for
123444224
osa-u.5
for
112937372
osa-u.5
for
4324255
zma-u.5
for
100276635
zma-u.5
for
100273331
sbi-r.1
for
8059157
ath-u.5
for
PTAC7
gma-u.5
for
100783539
gma-u.5
for
100527868
sly-u.5
for
101262600
bra-r.6
for
103874300
vvi-u.5
for
100244197
ppo-u.5
for
7464533
mtr-u.5
for
25491129
ghi-r.1
for
107929551
bna-r.1
for
106415415
bna-r.1
for
106348266
sot-r.1
for
102596113
cit-r.1
for
102612330
nta-r.1
for
107760362
nta-r.1
for
107767271


Ortholog ID: 10325
Species bdi tae tae tae hvu osa osa zma zma sbi ath gma gma sly bra vvi ppo mtr ghi bna bna sot cit nta nta
Symbol LOC100838181 LOC123078870 LOC123070424 LOC123061766 LOC123444224 LOC112937372 LOC4324255 LOC100276635 LOC100273331 LOC8059157 PTAC7 LOC100783539 LOC100527868 LOC101262600 LOC103874300 LOC100244197 LOC7464533 LOC25491129 LOC107929551 LOC106415415 LOC106348266 LOC102596113 LOC102612330 LOC107760362 LOC107767271
Function* protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 uncharacterized LOC100276635 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 uncharacterized LOC8059157 plastid transcriptionally active7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like uncharacterized LOC100527868 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like protein PLASTID TRANSCRIPTIONALLY ACTIVE 7
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00061 Fatty acid biosynthesis 3
tae00780 Biotin metabolism 3
tae01212 Fatty acid metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 2
tae00061 Fatty acid biosynthesis 2
tae00780 Biotin metabolism 2
tae01212 Fatty acid metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu00562 Inositol phosphate metabolism 2
hvu04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma03018 RNA degradation 3
gma03040 Spliceosome 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 3
gma01240 Biosynthesis of cofactors 3
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100838181 123078870 123070424 123061766 123444224 112937372 4324255 100276635 100273331 8059157 832500 100783539 100527868 101262600 103874300 100244197 7464533 25491129 107929551 106415415 106348266 102596113 102612330 107760362 107767271
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