ATTED-II : GeneCoexpression result

Species	Gene	Description
bdi-r.1	100840397	ruvB-like 2
tae-r.2	123052289	ruvB-like 2
tae-r.2	123188113	ruvB-like 2
tae-r.2	123044426	ruvB-like 2
hvu-r.1	123425566	ruvB-like 2
osa-u.5	4340348	uncharacterized LOC4340348
zma-u.5	100284260	ruvB-like 2
zma-u.5	100282179	uncharacterized LOC100282179
sbi-r.1	8058357	ruvB-like 2
ath-u.5	AT5G67630	P-loop containing nucleoside triphosphate hydrolases superfamily protein
gma-u.5	100799329	ruvB-like 2
gma-u.5	100787131	ruvB-like 2
sly-u.5	101262595	uncharacterized LOC101262595
bra-r.6	103874033	ruvB-like 2
vvi-u.5	100852990	uncharacterized LOC100852990
ppo-u.5	18100100	uncharacterized LOC18100100
ppo-u.5	7468792	uncharacterized LOC7468792
mtr-u.5	11440167	ruvB-like 2
ghi-r.1	107893145	ruvB-like 2
ghi-r.1	107886128	ruvB-like 2
ghi-r.1	107913303	ruvB-like 2
bna-r.1	106348169	ruvB-like 2
bna-r.1	106443999	ruvB-like 2
sot-r.1	102601112	ruvB-like 2
cit-r.1	102628941	uncharacterized LOC102628941
nta-r.1	107800852	uncharacterized LOC107800852
nta-r.1	107772379	uncharacterized LOC107772379
cre-r.1	CHLRE_10g442700v5	uncharacterized protein

Annotation

functional annotation

KEGG

bdi03082 [list] [network] ATP-dependent chromatin remodeling (59 genes)

GO BP

GO:0000492 [list] [network] box C/D snoRNP assembly	(5 genes)	IEA
GO:0006338 [list] [network] chromatin remodeling	(123 genes)	IEA
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II	(365 genes)	IEA

GO CC

GO:0097255 [list] [network] R2TP complex	(2 genes)	IEA
GO:0000812 [list] [network] Swr1 complex	(7 genes)	IEA
GO:0035267 [list] [network] NuA4 histone acetyltransferase complex	(8 genes)	IEA
GO:0031011 [list] [network] Ino80 complex	(13 genes)	IEA

GO MF

GO:0003678 [list] [network] DNA helicase activity	(58 genes)	IEA
GO:0016887 [list] [network] ATP hydrolysis activity	(417 genes)	IEA
GO:0005524 [list] [network] ATP binding	(1995 genes)	IEA

Protein

XP_003562823.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 4, mito 1, plas 1, mito_plas 1

(predict for XP_003562823.1)

Subcellular
localization
TargetP

other 5

(predict for XP_003562823.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100840397	tae-r.2 for 123052289	tae-r.2 for 123188113	tae-r.2 for 123044426	hvu-r.1 for 123425566	osa-u.5 for 4340348	zma-u.5 for 100284260	zma-u.5 for 100282179	sbi-r.1 for 8058357	ath-u.5 for AT5G67630	gma-u.5 for 100799329	gma-u.5 for 100787131	sly-u.5 for 101262595	bra-r.6 for 103874033	vvi-u.5 for 100852990	ppo-u.5 for 18100100	ppo-u.5 for 7468792	mtr-u.5 for 11440167	ghi-r.1 for 107893145	ghi-r.1 for 107886128	ghi-r.1 for 107913303	bna-r.1 for 106348169	bna-r.1 for 106443999	sot-r.1 for 102601112	cit-r.1 for 102628941	nta-r.1 for 107800852	nta-r.1 for 107772379	cre-r.1 for CHLRE_10g442700v5

Ortholog

Ortholog ID: 7611

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

ruvB-like 2

uncharacterized LOC4340348

ruvB-like 2

uncharacterized LOC100282179

ruvB-like 2

P-loop containing nucleoside triphosphate hydrolases superfamily protein

ruvB-like 2

uncharacterized LOC101262595

ruvB-like 2

uncharacterized LOC100852990

uncharacterized LOC18100100

uncharacterized LOC7468792

ruvB-like 2

uncharacterized LOC102628941

uncharacterized LOC107800852

uncharacterized LOC107772379

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae03018	RNA degradation	3
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae03020	RNA polymerase	2
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3
osa03010	Ribosome	3
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	3
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	3
gma03010	Ribosome	2
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04626	Plant-pathogen interaction	3
bra03008	Ribosome biogenesis in eukaryotes	2
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	6
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	3
ppo03420	Nucleotide excision repair	2
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	6
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	3
mtr03083	Polycomb repressive complex	2
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	3
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta03082	ATP-dependent chromatin remodeling	2
nta03010	Ribosome	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta03082	ATP-dependent chromatin remodeling	2
nta03010	Ribosome	2
nta03040	Spliceosome	2
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

100840397

123052289

123188113

123044426

123425566

4340348

100284260

100282179

8058357

836899

100799329

100787131

101262595

103874033

100852990

18100100

7468792

11440167

107886128

107913303

107949838

106348169

106443999

102601112

102628941

107800852

107772379

5716030

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100840397 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100840397 (bdi-r.1 coexpression data)


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	3	1	1	2	1	1	2	1	1	1	2	1	3	2	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100840397 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100840397 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**