ATTED-II : GeneCoexpression result

Species	Gene	Description
bdi-r.1	100843754	ribosome production factor 2 homolog
bdi-r.1	100832812	ribosome production factor 2 homolog
tae-r.2	123121526	ribosome production factor 2 homolog
tae-r.2	123103742	ribosome production factor 2 homolog
tae-r.2	123105272	ribosome production factor 2 homolog
hvu-r.1	123397089	ribosome production factor 2 homolog
osa-u.5	4323989	ribosome production factor 2 homolog
zma-u.5	100282857	uncharacterized LOC100282857
zma-u.5	100381340	uncharacterized LOC100381340
sbi-r.1	8080081	ribosome production factor 2 homolog
ath-u.5	AT3G23620	Ribosomal RNA processing Brix domain protein
gma-u.5	100814010	ribosome production factor 2 homolog
gma-u.5	100781114	ribosome production factor 2 homolog
sly-u.5	101263361	ribosome production factor 2 homolog
bra-r.6	103832323	ribosome production factor 2 homolog
bra-r.6	103828722	ribosome production factor 2 homolog
vvi-u.5	100252891	ribosome production factor 2 homolog
ppo-u.5	7463084	ribosome production factor 2 homolog
mtr-u.5	25483892	ribosome production factor 2 homolog
ghi-r.1	107942119	ribosome production factor 2 homolog
ghi-r.1	107905359	ribosome production factor 2 homolog
bna-r.1	106352977	ribosome production factor 2 homolog
bna-r.1	106452908	ribosome production factor 2 homolog
bna-r.1	106376889	ribosome production factor 2 homolog
sot-r.1	102597675	ribosome production factor 2 homolog
cit-r.1	102617096	ribosome production factor 2 homolog
nta-r.1	142178462	ribosome production factor 2 homolog
nta-r.1	142178421	ribosome production factor 2 homolog
cre-r.1	CHLRE_03g197000v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	(21 genes)	IEA
GO:0000027 [list] [network] ribosomal large subunit assembly	(26 genes)	IEA

GO CC

GO:0005730 [list] [network] nucleolus

(178 genes)

IEA

GO MF

GO:0019843 [list] [network] rRNA binding

(68 genes)

IEA

Protein

XP_003564848.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, nucl 3, cyto 2, mito 2

(predict for XP_003564848.1)

Subcellular
localization
TargetP

other 5, mito 3

(predict for XP_003564848.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100843754	bdi-r.1 for 100832812	tae-r.2 for 123121526	tae-r.2 for 123103742	tae-r.2 for 123105272	hvu-r.1 for 123397089	osa-u.5 for 4323989	zma-u.5 for 100282857	zma-u.5 for 100381340	sbi-r.1 for 8080081	ath-u.5 for AT3G23620	gma-u.5 for 100814010	gma-u.5 for 100781114	sly-u.5 for 101263361	bra-r.6 for 103832323	bra-r.6 for 103828722	vvi-u.5 for 100252891	ppo-u.5 for 7463084	mtr-u.5 for 25483892	ghi-r.1 for 107942119	ghi-r.1 for 107905359	bna-r.1 for 106352977	bna-r.1 for 106452908	bna-r.1 for 106376889	sot-r.1 for 102597675	cit-r.1 for 102617096	nta-r.1 for 142178462	nta-r.1 for 142178421	cre-r.1 for CHLRE_03g197000v5

Ortholog

Ortholog ID: 5759

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

ribosome production factor 2 homolog

uncharacterized LOC100282857

uncharacterized LOC100381340

ribosome production factor 2 homolog

Ribosomal RNA processing Brix domain protein

ribosome production factor 2 homolog

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00970	Aminoacyl-tRNA biosynthesis	6
bdi03010	Ribosome	3
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	3
bdi00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	5
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	2
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	4
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	3
nta03018	RNA degradation	2
nta03040	Spliceosome	2
nta03022	Basal transcription factors	2
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	3
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	3

Expression

Expression pattern

Entrez Gene ID^*

100843754

100832812

123121526

123111959

123117083

123397089

4323989

100282857

100381340

8080081

821942

100814010

100781114

101263361

103832323

103828722

100252891

7463084

25483892

107942119

107905359

106352977

106452908

106357866

102597675

102617096

142178421

107808655

5718772

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100843754 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100843754 (bdi-r.1 coexpression data)


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	1	1	2	1	1	2	1	2	1	1	1	2	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100843754 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100843754 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**