ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100844237	protein LOL3
bdi-r.1	100835743	protein LSD1
bdi-r.1	100837007	protein LOL2
tae-r.2	542922	protein LOL2
tae-r.2	123058397	protein LSD1
tae-r.2	123135520	protein LSD1
hvu-r.1	123445791	protein LSD1
hvu-r.1	123395547	protein LOL2-like
hvu-r.1	123452126	protein LOL3-like
osa-u.5	4352767	protein LOL2-like
osa-u.5	107279219	uncharacterized LOC107279219
osa-u.5	4333536	protein LOL3-like
zma-u.5	100285990	uncharacterized LOC100285990
zma-u.5	100285579	uncharacterized LOC100285579
zma-u.5	100194364	uncharacterized LOC100194364
sbi-r.1	8069635	protein LSD1
sbi-r.1	8057253	protein LOL3
sbi-r.1	8076679	protein LOL2
ath-u.5	LSD1	LSD1 zinc finger family protein
ath-u.5	LOL1	lsd one like 1
gma-u.5	100527656	uncharacterized LOC100527656
gma-u.5	100792570	protein LSD1
gma-u.5	100776644	protein LSD1
sly-u.5	LOL1	protein LOL1
sly-u.5	101265799	protein LSD1
bra-r.6	103874754	protein LOL1
bra-r.6	103858192	protein LSD1
vvi-u.5	100243854	protein LOL1
vvi-u.5	100242577	protein LSD1
ppo-u.5	7490691	protein LSD1
ppo-u.5	18096957	protein LOL1
ppo-u.5	18094183	protein LOL1
mtr-u.5	25486678	protein LSD1
mtr-u.5	11427425	protein LSD1
mtr-u.5	11409342	protein LOL1
ghi-r.1	107918760	protein LOL1
ghi-r.1	107924908	protein LSD1
ghi-r.1	107906327	protein LSD1
bna-r.1	106360767	protein LSD1
bna-r.1	106366989	protein LSD1-like
sot-r.1	102606168	protein LSD1-like
sot-r.1	LSD1	protein LSD1
sot-r.1	102593263	protein LOL1
cit-r.1	102618163	protein LOL1
nta-r.1	107825384	protein LOL1
nta-r.1	107771822	protein LOL1
nta-r.1	107792475	protein LSD1-like
cre-r.1	CHLRE_12g517350v5	uncharacterized protein

Top 50 coexpressed genes to 100844237 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100844237 (bdi-r.1 coexpression data)

CoexMap"100844237"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_003562028.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, nucl 1, vacu 1

(predict for XP_003562028.1)

Subcellular
localization
TargetP

other 2

(predict for XP_003562028.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100844237	bdi-r.1 for 100835743	bdi-r.1 for 100837007	tae-r.2 for 542922	tae-r.2 for 123058397	tae-r.2 for 123135520	hvu-r.1 for 123445791	hvu-r.1 for 123395547	hvu-r.1 for 123452126	osa-u.5 for 4352767	osa-u.5 for 107279219	osa-u.5 for 4333536	zma-u.5 for 100285990	zma-u.5 for 100285579	zma-u.5 for 100194364	sbi-r.1 for 8069635	sbi-r.1 for 8057253	sbi-r.1 for 8076679	ath-u.5 for LSD1	ath-u.5 for LOL1	gma-u.5 for 100527656	gma-u.5 for 100792570	gma-u.5 for 100776644	sly-u.5 for LOL1	sly-u.5 for 101265799	bra-r.6 for 103874754	bra-r.6 for 103858192	vvi-u.5 for 100243854	vvi-u.5 for 100242577	ppo-u.5 for 7490691	ppo-u.5 for 18096957	ppo-u.5 for 18094183	mtr-u.5 for 25486678	mtr-u.5 for 11427425	mtr-u.5 for 11409342	ghi-r.1 for 107918760	ghi-r.1 for 107924908	ghi-r.1 for 107906327	bna-r.1 for 106360767	bna-r.1 for 106366989	sot-r.1 for 102606168	sot-r.1 for LSD1	sot-r.1 for 102593263	cit-r.1 for 102618163	nta-r.1 for 107825384	nta-r.1 for 107771822	nta-r.1 for 107792475	cre-r.1 for CHLRE_12g517350v5

Ortholog

Ortholog ID: 1353

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

LSD1

LOL1

LOL1

LSD1

Function^*

protein LOL3

protein LSD1

protein LOL2

protein LOL3

protein LSD1

protein LOL2-like

protein LOL3-like

uncharacterized LOC107279219

protein LOL1-like

protein LSD1-like

uncharacterized LOC100285990

uncharacterized LOC100285579

uncharacterized LOC100194364

protein LSD1

protein LOL3

protein LOL2

LSD1 zinc finger family protein

lsd one like 1

uncharacterized LOC100527656

protein LOL1

protein LSD1

protein LOL1

protein LSD1

protein LOL1

protein LSD1

protein LOL1

protein LSD1

protein LOL1

protein LSD1

protein LSD1-like

protein LOL1

protein LSD1-like

protein LSD1

protein LOL1

protein LSD1-like

protein LOL2

protein LOL1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04146	Peroxisome	3
tae04120	Ubiquitin mediated proteolysis	3
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	5
tae04626	Plant-pathogen interaction	3
tae03250	Viral life cycle - HIV-1	2
tae03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00196	Photosynthesis - antenna proteins	4
tae00561	Glycerolipid metabolism	3
tae00053	Ascorbate and aldarate metabolism	3
tae01240	Biosynthesis of cofactors	3
tae04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00860	Porphyrin metabolism	5
osa00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04130	SNARE interactions in vesicular transport	3
zma00240	Pyrimidine metabolism	2
zma01232	Nucleotide metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04146	Peroxisome	2
zma04141	Protein processing in endoplasmic reticulum	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	4
sbi00710	Carbon fixation by Calvin cycle	3
sbi00196	Photosynthesis - antenna proteins	3
sbi00195	Photosynthesis	2
sbi00908	Zeatin biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi03250	Viral life cycle - HIV-1	2
sbi03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00195	Photosynthesis	2
ath00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00450	Selenocompound metabolism	2
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00010	Glycolysis / Gluconeogenesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	3
sly03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00196	Photosynthesis - antenna proteins	8
bra00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04145	Phagosome	2
vvi04517	IgSF CAM signaling	2
vvi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	6
ppo00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2
mtr04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi03083	Polycomb repressive complex	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi00514	Other types of O-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04130	SNARE interactions in vesicular transport	6
bna00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04136	Autophagy - other	4
sot00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2
sot04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04145	Phagosome	3
sot04517	IgSF CAM signaling	3
sot04814	Motor proteins	3
sot04142	Lysosome	2
sot04820	Cytoskeleton in muscle cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

100844237

100835743

100837007

123102232

123113228

100125715

123445791

123395547

123452126

107279219

4343203

4344713

100285990

100285579

100194364

8069635

8057253

8076679

827786

840148

100527656

100788563

100799843

101265355

101265799

103874754

103858192

103834161

100243854

100242577

7490691

18096957

18094183

25486678

11427425

11409342

107906327

107941151

107930372

106366989

106445609

102606168

102606105

102593263

102618163

107792475

107827827

142181204

5722642

The preparation time of this page was 0.1 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	3	3	3	3	3	2	3	2	2	2	3	3	3	2	3	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100844237 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100844237 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**