ATTED-II : GeneCoexpression result

Species	Gene	Description
bdi-r.1	100844933	glutamic acid-rich protein
tae-r.2	123040999	DNA-directed RNA polymerase III subunit rpc31
tae-r.2	123052115	glutamic acid-rich protein
tae-r.2	123185001	glutamic acid-rich protein
hvu-r.1	123429701	glutamic acid-rich protein-like
osa-u.5	4343875	uncharacterized LOC4343875
zma-u.5	100276973	uncharacterized LOC100276973
sbi-r.1	8056553	glutamic acid-rich protein
ath-u.5	AT4G01590	DNA-directed RNA polymerase III subunit
ath-u.5	AT4G35685	DNA-directed RNA polymerase III subunit
gma-u.5	100804236	glutamic acid-rich protein
gma-u.5	100785693	glutamic acid-rich protein
sly-u.5	101246067	uncharacterized LOC101246067
bra-r.6	103853345	DNA-directed RNA polymerase III subunit rpc31
vvi-u.5	104880228	uncharacterized LOC104880228
ppo-u.5	7483552	uncharacterized LOC7483552
mtr-u.5	11419825	glutamic acid-rich protein
mtr-u.5	11443721	DNA-directed RNA polymerase III subunit RPC7-like
ghi-r.1	107891146	nucleolar transcription factor 1
ghi-r.1	107889584	nucleolar transcription factor 1
bna-r.1	106434882	DNA-directed RNA polymerase III subunit rpc31
bna-r.1	106423224	DNA-directed RNA polymerase III subunit rpc31-like
sot-r.1	102583740	DNA-directed RNA polymerase III subunit RPC7-like
sot-r.1	102601956	glutamic acid-rich protein-like
cit-r.1	102610615	late secretory pathway protein AVL9-like
cit-r.1	102614475	uncharacterized LOC102614475
cit-r.1	102623728	WD repeat-containing protein JIP5-like
nta-r.1	107816093	uncharacterized LOC107816093
nta-r.1	107804681	uncharacterized LOC107804681

Annotation

functional annotation

KEGG

bdi03020 [list] [network] RNA polymerase (60 genes)

GO BP

GO:0006383 [list] [network] transcription by RNA polymerase III

(26 genes)

IEA

GO CC

GO:0005666 [list] [network] RNA polymerase III complex

(27 genes)

IEA

GO MF

Protein

XP_003559972.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, plas 1

(predict for XP_003559972.1)

Subcellular
localization
TargetP

mito 6, other 4

(predict for XP_003559972.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100844933	tae-r.2 for 123040999	tae-r.2 for 123052115	tae-r.2 for 123185001	hvu-r.1 for 123429701	osa-u.5 for 4343875	zma-u.5 for 100276973	sbi-r.1 for 8056553	ath-u.5 for AT4G01590	ath-u.5 for AT4G35685	gma-u.5 for 100804236	gma-u.5 for 100785693	sly-u.5 for 101246067	bra-r.6 for 103853345	vvi-u.5 for 104880228	ppo-u.5 for 7483552	mtr-u.5 for 11419825	mtr-u.5 for 11443721	ghi-r.1 for 107891146	ghi-r.1 for 107889584	bna-r.1 for 106434882	bna-r.1 for 106423224	sot-r.1 for 102583740	sot-r.1 for 102601956	cit-r.1 for 102610615	cit-r.1 for 102614475	cit-r.1 for 102623728	nta-r.1 for 107816093	nta-r.1 for 107804681

Ortholog

Ortholog ID: 6939

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

glutamic acid-rich protein

DNA-directed RNA polymerase III subunit rpc31

glutamic acid-rich protein

glutamic acid-rich protein-like

uncharacterized LOC4343875

uncharacterized LOC100276973

glutamic acid-rich protein

DNA-directed RNA polymerase III subunit

glutamic acid-rich protein

uncharacterized LOC101246067

DNA-directed RNA polymerase III subunit rpc31

uncharacterized LOC104880228

uncharacterized LOC7483552

glutamic acid-rich protein

DNA-directed RNA polymerase III subunit RPC7-like

nucleolar transcription factor 1

DNA-directed RNA polymerase III subunit rpc31

DNA-directed RNA polymerase III subunit rpc31-like

DNA-directed RNA polymerase III subunit RPC7-like

glutamic acid-rich protein-like

late secretory pathway protein AVL9-like

uncharacterized LOC102614475

WD repeat-containing protein JIP5-like

uncharacterized LOC107816093

uncharacterized LOC107804681

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	3
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	4
osa03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	4
gma03020	RNA polymerase	2
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	4
gma03020	RNA polymerase	2
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03020	RNA polymerase	4
bra03010	Ribosome	4
bra03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03020	RNA polymerase	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	4
mtr03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03420	Nucleotide excision repair	2
ghi03460	Fanconi anemia pathway	2
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03420	Nucleotide excision repair	2
ghi03460	Fanconi anemia pathway	2
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	7
bna03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	7
bna03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
sot01240	Biosynthesis of cofactors	2
sot03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2
nta03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2
nta03022	Basal transcription factors	2

Expression

Expression pattern

Entrez Gene ID^*

100844933

123040999

123052115

123185001

123429701

4343875

100276973

8056553

828101

829720

100804236

100785693

101246067

103853345

104880228

7483552

11419825

11443721

107891146

107889584

106434882

125594029

102583740

102601956

102610615

102614475

102623728

107816093

107804681

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100844933 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100844933 (bdi-r.1 coexpression data)


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	3	1	1	1	1	2	2	1	1	1	1	2	2	2	2	3	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100844933 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100844933 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**