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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100845231   cyclin-A3-2 
 bdi-r.1   100833039   cyclin-A3-1 
 bdi-r.1   100834254   cyclin-A3-2 
 tae-r.2   123110592   cyclin-A3-2 
 tae-r.2   123102420   cyclin-A3-2 
 hvu-r.1   123395514   cyclin-A3-2-like 
 hvu-r.1   123447783   cyclin-A3-1-like 
 osa-u.5   4352642   cyclin-A3-2-like 
 zma-u.5   100280138   uncharacterized LOC100280138 
 zma-u.5   100280674   cyclin-A2 
 zma-u.5   100280053   cyclin superfamily protein, putative 
 sbi-r.1   8074274   cyclin-A3-2 
 sbi-r.1   8064509   cyclin-A3-1 
 ath-u.5   CYCA3;1   Cyclin A3;1 
 ath-u.5   CYCA3;2   cyclin-dependent protein kinase 3;2 
 gma-u.5   100793436   putative cyclin-A3-1 
 sly-u.5   101255181   G2/mitotic-specific cyclin C13-1-like 
 sly-u.5   101258635   putative cyclin-A3-1 
 sly-u.5   101258929   G2/mitotic-specific cyclin C13-1-like 
 bra-r.6   103849583   cyclin-A3-2 
 bra-r.6   103849581   cyclin-A3-4-like 
 bra-r.6   103868712   cyclin-A3-2 
 vvi-u.5   100250548   putative cyclin-A3-1 
 ppo-u.5   18104821   putative cyclin-A3-1 
 mtr-u.5   11413042   putative cyclin-A3-1 
 mtr-u.5   25489917   putative cyclin-A3-1 
 mtr-u.5   25489918   putative cyclin-A3-1 
 ghi-r.1   107917057   cyclin-A3-1 
 ghi-r.1   107930544   putative cyclin-A3-1 
 ghi-r.1   107938357   cyclin-A3-1 
 bna-r.1   106451809   cyclin-A3-2-like 
 bna-r.1   106371865   cyclin-A3-4 
 bna-r.1   106403043   cyclin-A3-2 
 sot-r.1   102585677   putative cyclin-A3-1 
 sot-r.1   102586014   G2/mitotic-specific cyclin C13-1-like 
 cit-r.1   102621044   putative cyclin-A3-1 
 cit-r.1   102611949   putative cyclin-A3-1 
 nta-r.1   107812029   G2/mitotic-specific cyclin C13-1-like 
 nta-r.1   107824914   G2/mitotic-specific cyclin C13-1-like 
 nta-r.1   107827595   G2/mitotic-specific cyclin C13-1-like 

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Top 50 coexpressed genes to 100845231 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100845231 (bdi-r.1 coexpression data)

CoexMap"100845231"


bdiLOC100845231 | Entrez gene ID : 100845231      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 2 2 1 3 2 2 1 3 3 1 1 3 3 3 2 2 3 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0044772 [list] [network] mitotic cell cycle phase transition  (36 genes)  IEA  
GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity  (50 genes)  IEA  
GO CC
GO:0000307 [list] [network] cyclin-dependent protein kinase holoenzyme complex  (65 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2880 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4615 genes)  IEA  
GO MF
GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity  (47 genes)  IEA  
Protein XP_003558533.1 [sequence] [blastp]
XP_024312688.1 [sequence] [blastp]
XP_024312689.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 1,  E.R. 1,  nucl 1,  plas 1,  golg 1,  cyto_mito 1,  nucl_plas 1,  golg_plas 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_003558533.1)
chlo 5,  mito 1,  E.R. 1,  nucl 1,  cysk_nucl 1  (predict for XP_024312688.1)
chlo 6,  E.R. 2,  nucl 1,  cyto 1,  mito 1,  cyto_nucl 1  (predict for XP_024312689.1)
Subcellular
localization
TargetP
other 4,  chlo 4  (predict for XP_003558533.1)
other 4,  chlo 4  (predict for XP_024312688.1)
other 8,  mito 5  (predict for XP_024312689.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100845231
bdi-r.1
for
100833039
bdi-r.1
for
100834254
tae-r.2
for
123110592
tae-r.2
for
123102420
hvu-r.1
for
123395514
hvu-r.1
for
123447783
osa-u.5
for
4352642
zma-u.5
for
100280138
zma-u.5
for
100280674
zma-u.5
for
100280053
sbi-r.1
for
8074274
sbi-r.1
for
8064509
ath-u.5
for
CYCA3;1
ath-u.5
for
CYCA3;2
gma-u.5
for
100793436
sly-u.5
for
101255181
sly-u.5
for
101258635
sly-u.5
for
101258929
bra-r.6
for
103849583
bra-r.6
for
103849581
bra-r.6
for
103868712
vvi-u.5
for
100250548
ppo-u.5
for
18104821
mtr-u.5
for
11413042
mtr-u.5
for
25489917
mtr-u.5
for
25489918
ghi-r.1
for
107917057
ghi-r.1
for
107930544
ghi-r.1
for
107938357
bna-r.1
for
106451809
bna-r.1
for
106371865
bna-r.1
for
106403043
sot-r.1
for
102585677
sot-r.1
for
102586014
cit-r.1
for
102621044
cit-r.1
for
102611949
nta-r.1
for
107812029
nta-r.1
for
107824914
nta-r.1
for
107827595


Ortholog ID: 1000
Species bdi bdi bdi tae tae hvu hvu osa zma zma zma sbi sbi ath ath gma sly sly sly bra bra bra vvi ppo mtr mtr ghi ghi ghi bna bna bna sot sot cit cit nta nta nta
Symbol LOC100845231 LOC100833039 LOC100834254 LOC123119622 LOC123096132 LOC123395514 LOC123447783 LOC4333422 LOC100280138 LOC100280674 LOC100216646 LOC8074274 LOC8064509 CYCA3;1 CYCA3;2 LOC100793436 LOC101255181 LOC101267520 LOC101255776 LOC103868712 LOC103848253 LOC103827996 LOC100250548 LOC18104821 LOC11413042 LOC25489921 LOC107917057 LOC107938357 LOC107905616 LOC106371865 LOC106357845 LOC106426410 LOC102585677 LOC102589578 LOC102621044 LOC102611949 LOC107824914 LOC107827595 LOC107804529
Function* cyclin-A3-2 cyclin-A3-1 cyclin-A3-2 cyclin-A3-2 cyclin-A3-1 cyclin-A3-2-like cyclin-A3-1-like cyclin-A3-1 uncharacterized LOC100280138 cyclin-A2 cyclin superfamily protein, putative cyclin-A3-2 cyclin-A3-1 Cyclin A3;1 cyclin-dependent protein kinase 3;2 putative cyclin-A3-1 G2/mitotic-specific cyclin C13-1-like putative cyclin-A3-1 G2/mitotic-specific cyclin C13-1-like cyclin-A3-2 cyclin-A3-2 putative cyclin-A3-1 putative cyclin-A3-1 putative cyclin-A3-1 putative cyclin-A3-1 putative cyclin-A3-1 cyclin-A3-1 cyclin-A3-1 putative cyclin-A3-1 cyclin-A3-4 cyclin-A3-2-like cyclin-A3-2 putative cyclin-A3-1 G2/mitotic-specific cyclin C13-1-like putative cyclin-A3-1 putative cyclin-A3-1 G2/mitotic-specific cyclin C13-1-like G2/mitotic-specific cyclin C13-1-like putative cyclin-A3-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 2
bdi03410 Base excision repair 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 6
bdi03440 Homologous recombination 2
bdi03460 Fanconi anemia pathway 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 5
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 3
osa03420 Nucleotide excision repair 2
osa03430 Mismatch repair 2
osa03440 Homologous recombination 2
osa03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 3
zma00240 Pyrimidine metabolism 3
zma01232 Nucleotide metabolism 3
zma00230 Purine metabolism 2
zma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 7
sbi03420 Nucleotide excision repair 2
sbi03430 Mismatch repair 2
sbi03440 Homologous recombination 2
sbi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 5
ath03440 Homologous recombination 5
ath03420 Nucleotide excision repair 4
ath03430 Mismatch repair 4
ath03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 3
ath03030 DNA replication 3
ath03420 Nucleotide excision repair 2
ath03430 Mismatch repair 2
ath03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00240 Pyrimidine metabolism 4
sly01232 Nucleotide metabolism 4
sly00230 Purine metabolism 2
sly00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00240 Pyrimidine metabolism 2
sly01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 4
bra00240 Pyrimidine metabolism 3
bra01232 Nucleotide metabolism 3
bra00230 Purine metabolism 2
bra00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 4
bra00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 6
bra03420 Nucleotide excision repair 3
bra03430 Mismatch repair 3
bra03440 Homologous recombination 3
bra03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 8
ppo04814 Motor proteins 3
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 5
mtr03013 Nucleocytoplasmic transport 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03430 Mismatch repair 3
mtr03030 DNA replication 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 2
ghi00670 One carbon pool by folate 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00730 Thiamine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi00270 Cysteine and methionine metabolism 2
ghi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 7
sot03460 Fanconi anemia pathway 5
sot03440 Homologous recombination 4
sot03420 Nucleotide excision repair 2
sot03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
sot04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 5
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04820 Cytoskeleton in muscle cells 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100845231 100833039 100834254 123119622 123096132 123395514 123447783 4333422 100280138 100280674 100216646 8074274 8064509 834324 841124 100793436 101255181 101267520 101255776 103868712 103848253 103827996 100250548 18104821 11413042 25489921 107917057 107938357 107905616 106371865 106357845 106426410 102585677 102589578 102621044 102611949 107824914 107827595 107804529
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