ATTED-II : GeneCoexpression result

Species	Gene	Description
bdi-r.1	100845700	uncharacterized LOC100845700
bdi-r.1	100827577	11 kDa late embryogenesis abundant protein
tae-r.2	123144748	11 kDa late embryogenesis abundant protein
tae-r.2	123134214	11 kDa late embryogenesis abundant protein-like
tae-r.2	123127642	18 kDa seed maturation protein
hvu-r.1	123404088	18 kDa seed maturation protein-like
hvu-r.1	123411253	protein LE25-like
hvu-r.1	123395358	uncharacterized LOC123395358
osa-u.5	4345287	11 kDa late embryogenesis abundant protein
zma-u.5	103643070	11 kDa late embryogenesis abundant protein
zma-u.5	103641198	11 kDa late embryogenesis abundant protein-like
zma-u.5	103638344	protein LE25
ath-u.5	LEA4-5	Late Embryogenesis Abundant 4-5
gma-u.5	PM1	late embryogenesis abundant group 4 protein PM1
gma-u.5	PM9	late embryogenesis abundant group 4 protein PM9
gma-u.5	100781445	18 kDa seed maturation protein
bra-r.6	103855696	late embryogenesis abundant protein 46
bra-r.6	103847016	late embryogenesis abundant protein 46
vvi-u.5	100257252	18 kDa seed maturation protein
vvi-u.5	100262363	11 kDa late embryogenesis abundant protein
vvi-u.5	100267524	11 kDa late embryogenesis abundant protein
ppo-u.5	7483980	18 kDa seed maturation protein
mtr-u.5	11421661	18 kDa seed maturation protein
mtr-u.5	11437338	18 kDa seed maturation protein
ghi-r.1	107921338	late embryogenesis abundant protein 46
bna-r.1	106413949	late embryogenesis abundant protein 46-like
bna-r.1	106446049	late embryogenesis abundant protein 46
bna-r.1	106419166	late embryogenesis abundant protein 46
sot-r.1	102605148	protein LE25-like
sot-r.1	102604813	18 kDa seed maturation protein-like
cit-r.1	102628020	late embryogenesis abundant protein 46-like
nta-r.1	142169466	protein LE25-like
nta-r.1	142169464	protein LE25-like
nta-r.1	142169463	protein LE25-like

Annotation

functional annotation

KEGG

GO BP

GO:0009793 [list] [network] embryo development ending in seed dormancy

(13 genes)

IEA

GO CC

GO MF

Protein

XP_010234306.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 6, nucl 3, cyto_mito 3, mito_plas 3

(predict for XP_010234306.1)

Subcellular
localization
TargetP

other 4

(predict for XP_010234306.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100845700	bdi-r.1 for 100827577	tae-r.2 for 123144748	tae-r.2 for 123134214	tae-r.2 for 123127642	hvu-r.1 for 123404088	hvu-r.1 for 123411253	hvu-r.1 for 123395358	osa-u.5 for 4345287	zma-u.5 for 103643070	zma-u.5 for 103641198	zma-u.5 for 103638344	ath-u.5 for LEA4-5	gma-u.5 for PM1	gma-u.5 for PM9	gma-u.5 for 100781445	bra-r.6 for 103855696	bra-r.6 for 103847016	vvi-u.5 for 100257252	vvi-u.5 for 100262363	vvi-u.5 for 100267524	ppo-u.5 for 7483980	mtr-u.5 for 11421661	mtr-u.5 for 11437338	ghi-r.1 for 107921338	bna-r.1 for 106413949	bna-r.1 for 106446049	bna-r.1 for 106419166	sot-r.1 for 102605148	sot-r.1 for 102604813	cit-r.1 for 102628020	nta-r.1 for 142169466	nta-r.1 for 142169464	nta-r.1 for 142169463

Ortholog

Ortholog ID: 1551

Species

bdi

tae

hvu

osa

zma

ath

gma

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

LEA4-5

PM1

PM9

Function^*

uncharacterized LOC100845700

11 kDa late embryogenesis abundant protein

11 kDa late embryogenesis abundant protein-like

11 kDa late embryogenesis abundant protein

protein LE25

18 kDa seed maturation protein-like

protein LE25-like

uncharacterized LOC123395358

11 kDa late embryogenesis abundant protein

11 kDa late embryogenesis abundant protein-like

protein LE25

Late Embryogenesis Abundant 4-5

late embryogenesis abundant group 4 protein PM1

late embryogenesis abundant group 4 protein PM9

18 kDa seed maturation protein

late embryogenesis abundant protein 46

18 kDa seed maturation protein

11 kDa late embryogenesis abundant protein

18 kDa seed maturation protein

late embryogenesis abundant protein 46

late embryogenesis abundant protein 46-like

late embryogenesis abundant protein 46

protein LE25-like

18 kDa seed maturation protein-like

late embryogenesis abundant protein 46-like

protein LE25-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04626	Plant-pathogen interaction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00061	Fatty acid biosynthesis	2
hvu01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04016	MAPK signaling pathway - plant	2
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	2
vvi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	2
vvi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	3
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04016	MAPK signaling pathway - plant	2
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00785	Lipoic acid metabolism	3
bna01240	Biosynthesis of cofactors	3
bna04016	MAPK signaling pathway - plant	2
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	3
bna04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00052	Galactose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00052	Galactose metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01250	Biosynthesis of nucleotide sugars	2

Expression

Expression pattern

Entrez Gene ID^*

100845700

100827577

123134214

123116040

123166990

123404088

123411253

123395358

4345287

103643070

103641198

103638344

830565

547828

547921

100781445

103855696

103847016

100257252

100262363

100267524

7483980

11421661

11437338

11437936

121203045

106413949

106419166

102605148

102604813

102628020

107780126

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100845700 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100845700 (bdi-r.1 coexpression data)


Species	bdi	tae	hvu	osa	zma	ath	gma	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	sly	sbi	cre
Paralog	2	3	3	1	3	1	3	2	3	1	2	1	3	2	1	3	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100845700 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100845700 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**