ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cit-r.1	102613010	uncharacterized LOC102613010
cit-r.1	102617655	uncharacterized LOC102617655
ath-u.5	AT4G38060	uncharacterized protein
ath-u.5	AT5G65480	uncharacterized protein
bra-r.6	103837582	uncharacterized LOC103837582
bra-r.6	103855772	uncharacterized LOC103855772
bra-r.6	103873983	uncharacterized LOC103873983
ghi-r.1	121230315	uncharacterized LOC121230315
ghi-r.1	107897513	uncharacterized LOC107897513
ghi-r.1	107914356	uncharacterized LOC107914356
bna-r.1	106405797	uncharacterized LOC106405797
bna-r.1	125577098	uncharacterized LOC125577098
bna-r.1	106439555	uncharacterized LOC106439555
gma-u.5	100812670	uncharacterized LOC100812670
gma-u.5	100808486	uncharacterized LOC100808486
vvi-u.5	100855091	uncharacterized LOC100855091
vvi-u.5	100853077	uncharacterized LOC100853077
ppo-u.5	7461825	uncharacterized LOC7461825
mtr-u.5	11416529	uncharacterized LOC11416529
mtr-u.5	25502886	uncharacterized LOC25502886
mtr-u.5	11442322	uncharacterized LOC11442322
sly-u.5	101255390	uncharacterized LOC101255390
sly-u.5	101249158	uncharacterized LOC101249158
sly-u.5	101247386	uncharacterized LOC101247386
sot-r.1	102603530	uncharacterized LOC102603530
sot-r.1	102606343	uncharacterized LOC102606343
sot-r.1	102582290	uncharacterized LOC102582290
nta-r.1	107783799	uncharacterized LOC107783799
nta-r.1	107769431	uncharacterized LOC107769431
nta-r.1	107777327	uncharacterized LOC107777327
osa-u.5	4345570	uncharacterized LOC4345570
osa-u.5	4346914	uncharacterized LOC4346914
zma-u.5	100277803	uncharacterized LOC100277803
zma-u.5	100277074	uncharacterized LOC100277074
zma-u.5	103643322	uncharacterized LOC103643322
tae-r.2	123111843	uncharacterized LOC123111843
tae-r.2	123103633	uncharacterized LOC123103633
tae-r.2	123121410	uncharacterized LOC123121410
hvu-r.1	123396814	uncharacterized LOC123396814
sbi-r.1	110432930	uncharacterized LOC110432930
sbi-r.1	8073548	uncharacterized LOC8073548
bdi-r.1	100845849	uncharacterized LOC100845849
bdi-r.1	100841052	uncharacterized LOC100841052

Top 50 coexpressed genes to 102613010 (cit-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102613010 (cit-r.1 coexpression data)

CoexMap"102613010"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_006466315.2 [sequence] [blastp]
XP_006466316.2 [sequence] [blastp]
XP_006466318.2 [sequence] [blastp]
XP_052300318.1 [sequence] [blastp]
XP_052300319.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 1, cysk 1, mito 1, plas 1, mito_plas 1	(predict for XP_006466315.2)
nucl 6, chlo 1, cysk 1, mito 1, plas 1, mito_plas 1	(predict for XP_006466316.2)
nucl 6, cyto_nucl 4, chlo 1, mito 1, chlo_mito 1	(predict for XP_006466318.2)
nucl 6, chlo 1, cysk 1, mito 1, plas 1, mito_plas 1	(predict for XP_052300318.1)
nucl 6, cyto_nucl 4, chlo 1, mito 1, chlo_mito 1	(predict for XP_052300319.1)

Subcellular
localization
TargetP

chlo 8	(predict for XP_006466315.2)
chlo 8	(predict for XP_006466316.2)
chlo 8	(predict for XP_006466318.2)
chlo 8	(predict for XP_052300318.1)
chlo 8	(predict for XP_052300319.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cit-r.1 for 102613010	cit-r.1 for 102617655	ath-u.5 for AT4G38060	ath-u.5 for AT5G65480	bra-r.6 for 103837582	bra-r.6 for 103855772	bra-r.6 for 103873983	ghi-r.1 for 121230315	ghi-r.1 for 107897513	ghi-r.1 for 107914356	bna-r.1 for 106405797	bna-r.1 for 125577098	bna-r.1 for 106439555	gma-u.5 for 100812670	gma-u.5 for 100808486	vvi-u.5 for 100855091	vvi-u.5 for 100853077	ppo-u.5 for 7461825	mtr-u.5 for 11416529	mtr-u.5 for 25502886	mtr-u.5 for 11442322	sly-u.5 for 101255390	sly-u.5 for 101249158	sly-u.5 for 101247386	sot-r.1 for 102603530	sot-r.1 for 102606343	sot-r.1 for 102582290	nta-r.1 for 107783799	nta-r.1 for 107769431	nta-r.1 for 107777327	osa-u.5 for 4345570	osa-u.5 for 4346914	zma-u.5 for 100277803	zma-u.5 for 100277074	zma-u.5 for 103643322	tae-r.2 for 123111843	tae-r.2 for 123103633	tae-r.2 for 123121410	hvu-r.1 for 123396814	sbi-r.1 for 110432930	sbi-r.1 for 8073548	bdi-r.1 for 100845849	bdi-r.1 for 100841052

Ortholog

Ortholog ID: 1993

Species

cit

ath

bra

ghi

bna

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC102613010

uncharacterized LOC102617655

uncharacterized protein

uncharacterized LOC103837582

uncharacterized LOC103855772

uncharacterized LOC107914356

uncharacterized LOC107916811

uncharacterized LOC107950477

uncharacterized LOC106439555

uncharacterized LOC106361382

uncharacterized LOC106418460

uncharacterized LOC100812670

uncharacterized LOC100808486

uncharacterized LOC100818330

uncharacterized LOC100855091

uncharacterized LOC100853077

uncharacterized LOC7461825

uncharacterized LOC11416529

uncharacterized LOC25502886

uncharacterized LOC11442322

uncharacterized LOC101255390

uncharacterized LOC101249158

uncharacterized LOC101247386

uncharacterized LOC102603530

uncharacterized LOC102606343

uncharacterized LOC102582290

uncharacterized LOC107769431

uncharacterized LOC107777327

uncharacterized LOC107796294

uncharacterized LOC4345570

uncharacterized LOC4346914

uncharacterized LOC100277803

uncharacterized LOC100277074

uncharacterized LOC100274346

uncharacterized LOC123111843

uncharacterized LOC123103633

uncharacterized LOC123121410

uncharacterized LOC123396814

uncharacterized LOC110432930

uncharacterized LOC8073548

uncharacterized LOC100845849

uncharacterized LOC100841052

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
bna00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
bna00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00280	Valine, leucine and isoleucine degradation	2
gma00650	Butanoate metabolism	2
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00010	Glycolysis / Gluconeogenesis	3
mtr00071	Fatty acid degradation	3
mtr00350	Tyrosine metabolism	3
mtr00592	alpha-Linolenic acid metabolism	3
mtr00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	5
sot04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01200	Carbon metabolism	4
nta01230	Biosynthesis of amino acids	4
nta00010	Glycolysis / Gluconeogenesis	2
nta00030	Pentose phosphate pathway	2
nta00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	3
zma03008	Ribosome biogenesis in eukaryotes	2
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	2
zma00010	Glycolysis / Gluconeogenesis	2
zma00030	Pentose phosphate pathway	2
zma00051	Fructose and mannose metabolism	2
zma00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

102613010

102617655

829962

836673

103837582

103855772

107914356

107916811

107950477

106439555

106361382

106418460

100812670

100808486

100818330

100855091

100853077

7461825

11416529

25502886

11442322

101255390

101249158

101247386

102603530

102606343

102582290

107769431

107777327

107796294

4345570

4346914

100277803

100277074

100274346

123111843

123103633

123121410

123396814

110432930

8073548

100845849

100841052

The preparation time of this page was 0.1 [sec].


Species	cit	ath	bra	ghi	bna	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	2	3	3	3	2	2	1	3	3	3	3	2	3	3	1	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102613010 (cit-r.1 coexpression data)

Top 50 enrichment test to 102613010 (cit-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**