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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   127898581   pentatricopeptide repeat-containing protein At1g19720 
 ath-u.5   AT1G19720   Pentatricopeptide repeat (PPR-like) superfamily protein 
 bra-r.6   103872774   pentatricopeptide repeat-containing protein At1g19720 
 ghi-r.1   107905470   pentatricopeptide repeat-containing protein At1g19720 
 ghi-r.1   107957954   pentatricopeptide repeat-containing protein At1g19720-like 
 bna-r.1   106414502   pentatricopeptide repeat-containing protein At1g19720 
 bna-r.1   106346939   pentatricopeptide repeat-containing protein At1g19720 
 gma-u.5   100820050   pentatricopeptide repeat-containing protein At1g19720 
 gma-u.5   102663842   pentatricopeptide repeat-containing protein At1g19720 
 sly-u.5   101245456   pentatricopeptide repeat-containing protein 
 sot-r.1   102606037   pentatricopeptide repeat-containing protein At1g19720 
 nta-r.1   107790676   pentatricopeptide repeat-containing protein At1g19720-like 
 nta-r.1   107794118   pentatricopeptide repeat-containing protein At1g19720 
 zma-u.5   103628968   pentatricopeptide repeat-containing protein At1g19720 
 tae-r.2   123169609   pentatricopeptide repeat-containing protein At1g19720 
 tae-r.2   123155682   pentatricopeptide repeat-containing protein At1g19720 
 tae-r.2   123154244   pentatricopeptide repeat-containing protein At1g19720 
 hvu-r.1   123410309   pentatricopeptide repeat-containing protein At1g19720 
 sbi-r.1   8066088   pentatricopeptide repeat-containing protein At1g19720 
 bdi-r.1   100829727   pentatricopeptide repeat-containing protein At1g19720 

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Top 50 coexpressed genes to 127898581 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 127898581 (cit-r.1 coexpression data)

CoexMap"127898581"


citLOC127898581 | Entrez gene ID : 127898581    
Species cit ath bra ghi bna gma sly sot nta zma tae hvu sbi bdi osa mtr ppo vvi cre
Paralog 1 1 1 2 2 2 1 1 2 1 3 1 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (369 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (771 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1117 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_052297489.1 [sequence] [blastp]
XP_052297490.1 [sequence] [blastp]
XP_052297491.1 [sequence] [blastp]
XP_052297492.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 1,  plas 1,  cyto_plas 1,  nucl 1,  extr 1,  vacu 1,  E.R. 1,  cysk 1,  cysk_nucl 1,  golg_plas 1,  E.R._vacu 1,  cyto_pero 1,  mito_plas 1  (predict for XP_052297489.1)
chlo 4,  cyto 1,  plas 1,  cyto_plas 1,  nucl 1,  extr 1,  vacu 1,  E.R. 1,  cysk 1,  cysk_nucl 1,  golg_plas 1,  E.R._vacu 1,  cyto_pero 1,  mito_plas 1  (predict for XP_052297490.1)
chlo 3,  nucl 2,  cyto 1,  plas 1,  cysk_nucl 1,  cyto_plas 1  (predict for XP_052297491.1)
chlo 4,  golg 2,  chlo_mito 2,  vacu 1,  golg_plas 1  (predict for XP_052297492.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_052297489.1)
chlo 7  (predict for XP_052297490.1)
chlo 8  (predict for XP_052297491.1)
mito 9,  other 4  (predict for XP_052297492.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
127898581
ath-u.5
for
AT1G19720
bra-r.6
for
103872774
ghi-r.1
for
107905470
ghi-r.1
for
107957954
bna-r.1
for
106414502
bna-r.1
for
106346939
gma-u.5
for
100820050
gma-u.5
for
102663842
sly-u.5
for
101245456
sot-r.1
for
102606037
nta-r.1
for
107790676
nta-r.1
for
107794118
zma-u.5
for
103628968
tae-r.2
for
123169609
tae-r.2
for
123155682
tae-r.2
for
123154244
hvu-r.1
for
123410309
sbi-r.1
for
8066088
bdi-r.1
for
100829727


Ortholog ID: 12249
Species cit ath bra ghi ghi bna bna gma gma sly sot nta nta zma tae tae tae hvu sbi bdi
Symbol LOC127898581 AT1G19720 LOC103872774 LOC107905470 LOC107957954 LOC106414502 LOC106346939 LOC100820050 LOC102663842 LOC101245456 LOC102606037 LOC107790676 LOC107794118 LOC103628968 LOC123169609 LOC123155682 LOC123154244 LOC123410309 LOC8066088 LOC100829727
Function* pentatricopeptide repeat-containing protein At1g19720 Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At1g19720 pentatricopeptide repeat-containing protein At1g19720 pentatricopeptide repeat-containing protein At1g19720-like pentatricopeptide repeat-containing protein At1g19720 pentatricopeptide repeat-containing protein At1g19720 pentatricopeptide repeat-containing protein At1g19720 pentatricopeptide repeat-containing protein At1g19720 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At1g19720 pentatricopeptide repeat-containing protein At1g19720-like pentatricopeptide repeat-containing protein At1g19720 pentatricopeptide repeat-containing protein At1g19720 pentatricopeptide repeat-containing protein At1g19720 pentatricopeptide repeat-containing protein At1g19720 pentatricopeptide repeat-containing protein At1g19720 pentatricopeptide repeat-containing protein At1g19720 pentatricopeptide repeat-containing protein At1g19720 pentatricopeptide repeat-containing protein At1g19720
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00630 Glyoxylate and dicarboxylate metabolism 2
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 127898581 838561 103872774 107905470 107957954 106414502 106346939 100820050 102663842 101245456 102606037 107790676 107794118 103628968 123169609 123155682 123154244 123410309 8066088 100829727
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