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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g439200v5   uncharacterized protein 
 ath-u.5   EMB2820   Cytidine/deoxycytidylate deaminase family protein 
 gma-u.5   100789556   tRNA-specific adenosine deaminase TAD3 
 sly-u.5   101264494   tRNA-specific adenosine deaminase TAD3 
 osa-u.5   4346442   tRNA-specific adenosine deaminase TAD3 
 zma-u.5   103641482   tRNA-specific adenosine deaminase TAD3 
 zma-u.5   100280681   hydrolase/ zinc ion binding protein 
 bra-r.6   103830853   tRNA-specific adenosine deaminase TAD3 
 vvi-u.5   100256903   tRNA-specific adenosine deaminase TAD3 
 ppo-u.5   18104268   tRNA-specific adenosine deaminase TAD3 
 mtr-u.5   11416732   tRNA-specific adenosine deaminase TAD3 
 tae-r.2   123070346   tRNA-specific adenosine deaminase TAD3 
 tae-r.2   123088043   tRNA-specific adenosine deaminase TAD3 
 tae-r.2   123103322   tRNA-specific adenosine deaminase TAD3 
 hvu-r.1   123396021   tRNA-specific adenosine deaminase TAD3-like 
 ghi-r.1   107959561   tRNA-specific adenosine deaminase TAD3 
 ghi-r.1   107914169   tRNA-specific adenosine deaminase TAD3 
 bna-r.1   106352242   tRNA-specific adenosine deaminase TAD3-like 
 bna-r.1   BNACNNG17020D   tRNA-specific adenosine deaminase TAD3 
 sbi-r.1   8065991   probable inactive tRNA-specific adenosine deaminase-like protein 3 
 sot-r.1   102580876   probable inactive tRNA-specific adenosine deaminase-like protein 3 
 cit-r.1   102618686   tRNA-specific adenosine deaminase TAD3 
 bdi-r.1   100828319   probable inactive tRNA-specific adenosine deaminase-like protein 3 
 bdi-r.1   100822778   probable inactive tRNA-specific adenosine deaminase-like protein 3 
 nta-r.1   107824859   tRNA-specific adenosine deaminase TAD3-like 
 nta-r.1   107810747   tRNA-specific adenosine deaminase TAD3 

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Top 50 coexpressed genes to CHLRE_10g439200v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g439200v5 (cre-r.1 coexpression data)

CoexMap"5716080"


creCHLRE_10g439200v5 | Entrez gene ID : 5716080      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 1 1 1 2 1 1 1 1 3 1 2 2 1 1 1 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0002100 [list] [network] tRNA wobble adenosine to inosine editing  (3 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0052717 [list] [network] tRNA-specific adenosine-34 deaminase activity  (2 genes)  IEA  
Protein XP_001690555.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 1,  chlo 1,  mito 1,  plas 1,  pero 1,  chlo_mito 1,  cysk_nucl 1,  E.R._vacu 1,  mito_plas 1  (predict for XP_001690555.1)
Subcellular
localization
TargetP
other 7  (predict for XP_001690555.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g439200v5
ath-u.5
for
EMB2820
gma-u.5
for
100789556
sly-u.5
for
101264494
osa-u.5
for
4346442
zma-u.5
for
103641482
zma-u.5
for
100280681
bra-r.6
for
103830853
vvi-u.5
for
100256903
ppo-u.5
for
18104268
mtr-u.5
for
11416732
tae-r.2
for
123070346
tae-r.2
for
123088043
tae-r.2
for
123103322
hvu-r.1
for
123396021
ghi-r.1
for
107959561
ghi-r.1
for
107914169
bna-r.1
for
106352242
bna-r.1
for
BNACNNG17020D
sbi-r.1
for
8065991
sot-r.1
for
102580876
cit-r.1
for
102618686
bdi-r.1
for
100828319
bdi-r.1
for
100822778
nta-r.1
for
107824859
nta-r.1
for
107810747


Ortholog ID: 8622
Species cre ath gma sly osa zma zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi bdi nta nta
Symbol CHLRE_10g439200v5 EMB2820 LOC100789556 LOC101264494 LOC4346442 LOC103641482 LOC100280681 LOC103830853 LOC100256903 LOC18104268 LOC11416732 LOC123070346 LOC123103322 LOC123120744 LOC123396021 LOC107959561 LOC107914169 LOC106352242 BNACNNG17020D LOC8065991 LOC102580876 LOC102618686 LOC100828319 LOC100822778 LOC107824859 LOC107810747
Function* uncharacterized protein Cytidine/deoxycytidylate deaminase family protein tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 hydrolase/ zinc ion binding protein tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3-like tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3 tRNA-specific adenosine deaminase TAD3-like tRNA-specific adenosine deaminase TAD3 probable inactive tRNA-specific adenosine deaminase-like protein 3 probable inactive tRNA-specific adenosine deaminase-like protein 3 tRNA-specific adenosine deaminase TAD3 probable inactive tRNA-specific adenosine deaminase-like protein 3 probable inactive tRNA-specific adenosine deaminase-like protein 3 tRNA-specific adenosine deaminase TAD3-like tRNA-specific adenosine deaminase TAD3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00510 N-Glycan biosynthesis 2
zma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00541 Biosynthesis of various nucleotide sugars 2
bra01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00562 Inositol phosphate metabolism 2
ppo04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
tae03010 Ribosome 2
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00340 Histidine metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta00999 Biosynthesis of various plant secondary metabolites 2
nta01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5716080 832539 100789556 101264494 4346442 103641482 100280681 103830853 100256903 18104268 11416732 123070346 123103322 123120744 123396021 107959561 107914169 106352242 106401848 8065991 102580876 102618686 100828319 100822778 107824859 107810747
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