ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_12g505200v5	uncharacterized protein
ath-u.5	AT5G60990	DEA(D/H)-box RNA helicase family protein
gma-u.5	100775796	DEAD-box ATP-dependent RNA helicase 10
sly-u.5	DEAD31	DEAD-box RNA helicase DEAD31
osa-u.5	4333678	DEAD-box ATP-dependent RNA helicase 10-like
zma-u.5	100193011	putative DEAD-box ATP-dependent RNA helicase family protein
bra-r.6	103860561	DEAD-box ATP-dependent RNA helicase 10
bra-r.6	103854930	DEAD-box ATP-dependent RNA helicase 10
vvi-u.5	100246466	DEAD-box ATP-dependent RNA helicase 10
ppo-u.5	7455835	DEAD-box ATP-dependent RNA helicase 10
ppo-u.5	7462557	DEAD-box ATP-dependent RNA helicase 10
ppo-u.5	7495753	DEAD-box ATP-dependent RNA helicase 10
mtr-u.5	11437150	DEAD-box ATP-dependent RNA helicase 10
mtr-u.5	25498396	DEAD-box ATP-dependent RNA helicase 10
tae-r.2	123043858	DEAD-box ATP-dependent RNA helicase 10
tae-r.2	123051731	DEAD-box ATP-dependent RNA helicase 10
hvu-r.1	123424890	DEAD-box ATP-dependent RNA helicase 10
ghi-r.1	107919884	DEAD-box ATP-dependent RNA helicase 10
ghi-r.1	107927312	DEAD-box ATP-dependent RNA helicase 10
ghi-r.1	107895131	DEAD-box ATP-dependent RNA helicase 10
bna-r.1	106410935	DEAD-box ATP-dependent RNA helicase 10
bna-r.1	106445174	DEAD-box ATP-dependent RNA helicase 10
bna-r.1	106382729	DEAD-box ATP-dependent RNA helicase 10
sbi-r.1	8077969	DEAD-box ATP-dependent RNA helicase 10
sbi-r.1	8073451	DEAD-box ATP-dependent RNA helicase 10
sot-r.1	102578159	DEAD-box ATP-dependent RNA helicase 10
cit-r.1	102624304	DEAD-box ATP-dependent RNA helicase 10
bdi-r.1	100826945	DEAD-box ATP-dependent RNA helicase 10
bdi-r.1	100824545	DEAD-box ATP-dependent RNA helicase 10
nta-r.1	107825428	DEAD-box ATP-dependent RNA helicase 10
nta-r.1	107826682	DEAD-box ATP-dependent RNA helicase 10
nta-r.1	107830086	DEAD-box ATP-dependent RNA helicase 10-like

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0005524 [list] [network] ATP binding	(1223 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(1484 genes)	IEA

Protein

XP_001690813.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, nucl 1, extr 1, cyto 1, mito 1, plas 1, vacu 1, E.R. 1, pero 1, cysk_nucl 1, E.R._vacu 1, cyto_pero 1, E.R._plas 1, mito_plas 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_001690813.1)

Subcellular
localization
TargetP

other 8

(predict for XP_001690813.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_12g505200v5	ath-u.5 for AT5G60990	gma-u.5 for 100775796	sly-u.5 for DEAD31	osa-u.5 for 4333678	zma-u.5 for 100193011	bra-r.6 for 103860561	bra-r.6 for 103854930	vvi-u.5 for 100246466	ppo-u.5 for 7455835	ppo-u.5 for 7462557	ppo-u.5 for 7495753	mtr-u.5 for 11437150	mtr-u.5 for 25498396	tae-r.2 for 123043858	tae-r.2 for 123051731	hvu-r.1 for 123424890	ghi-r.1 for 107919884	ghi-r.1 for 107927312	ghi-r.1 for 107895131	bna-r.1 for 106410935	bna-r.1 for 106445174	bna-r.1 for 106382729	sbi-r.1 for 8077969	sbi-r.1 for 8073451	sot-r.1 for 102578159	cit-r.1 for 102624304	bdi-r.1 for 100826945	bdi-r.1 for 100824545	nta-r.1 for 107825428	nta-r.1 for 107826682	nta-r.1 for 107830086

Ortholog

Ortholog ID: 5395

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

DEAD31

Function^*

uncharacterized protein

DEA(D/H)-box RNA helicase family protein

DEAD-box ATP-dependent RNA helicase 10

DEAD-box RNA helicase DEAD31

DEAD-box ATP-dependent RNA helicase 10-like

putative DEAD-box ATP-dependent RNA helicase family protein

DEAD-box ATP-dependent RNA helicase 10

DEAD-box ATP-dependent RNA helicase 10-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	7
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	6
mtr03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	4
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03050	Proteasome	2
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03020	RNA polymerase	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4

Expression

Expression pattern

Entrez Gene ID^*

5716460

836220

100775796

101257016

4333678

100193011

103860561

103854930

100246466

7455835

7462557

7495753

11437150

25498396

123043858

123133805

123424890

107919884

107927312

107886926

106445174

106382729

106439953

8077969

8073451

102578159

102624304

100826945

100824545

107825428

107826682

107830086

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_12g505200v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g505200v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	1	1	1	1	2	1	3	2	2	1	3	3	2	1	1	2	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_12g505200v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g505200v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**