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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g485950v5   uncharacterized protein 
 ath-u.5   AT5G06550   transferring glycosyl group transferase 
 gma-u.5   100817138   F-box protein At5g06550 
 gma-u.5   100782241   F-box protein At5g06550 
 sly-u.5   101267570   arginine-specific demethylase JMJ22 
 osa-u.5   4350759   arginine-specific demethylase JMJ22 
 zma-u.5   100281525   uncharacterized LOC100281525 
 bra-r.6   103846996   F-box protein At5g06550 
 vvi-u.5   100251232   F-box protein At5g06550-like 
 ppo-u.5   18106178   arginine-specific demethylase JMJ22 
 mtr-u.5   25499535   F-box protein At5g06550 
 tae-r.2   123158926   F-box protein At5g06550 
 tae-r.2   123168171   F-box protein At5g06550 
 tae-r.2   123148885   F-box protein At5g06550 
 hvu-r.1   123407498   F-box protein At5g06550 
 ghi-r.1   107948516   F-box protein At5g06550 
 ghi-r.1   107899197   F-box protein At5g06550 
 bna-r.1   106419303   F-box protein At5g06550-like 
 bna-r.1   106375466   F-box protein At5g06550 
 sbi-r.1   8062640   F-box protein At5g06550 
 sot-r.1   102592275   F-box protein At5g06550 
 cit-r.1   102615238   arginine-specific demethylase JMJ22 
 bdi-r.1   100833736   F-box protein At5g06550 
 nta-r.1   107817863   arginine-specific demethylase JMJ22-like 
 nta-r.1   107830538   arginine-specific demethylase JMJ22 

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Top 50 coexpressed genes to CHLRE_12g485950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g485950v5 (cre-r.1 coexpression data)

CoexMap"5716618"


creCHLRE_12g485950v5 | Entrez gene ID : 5716618      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 1 1 1 1 3 1 2 2 1 1 1 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0000987 [list] [network] cis-regulatory region sequence-specific DNA binding  (46 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042918101.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto 2,  E.R._plas 2,  plas 1,  E.R. 1,  cyto_pero 1  (predict for XP_042918101.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042918101.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g485950v5
ath-u.5
for
AT5G06550
gma-u.5
for
100817138
gma-u.5
for
100782241
sly-u.5
for
101267570
osa-u.5
for
4350759
zma-u.5
for
100281525
bra-r.6
for
103846996
vvi-u.5
for
100251232
ppo-u.5
for
18106178
mtr-u.5
for
25499535
tae-r.2
for
123158926
tae-r.2
for
123168171
tae-r.2
for
123148885
hvu-r.1
for
123407498
ghi-r.1
for
107948516
ghi-r.1
for
107899197
bna-r.1
for
106419303
bna-r.1
for
106375466
sbi-r.1
for
8062640
sot-r.1
for
102592275
cit-r.1
for
102615238
bdi-r.1
for
100833736
nta-r.1
for
107817863
nta-r.1
for
107830538


Ortholog ID: 10279
Species cre ath gma gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_12g485950v5 AT5G06550 LOC100817138 LOC100782241 LOC101267570 LOC4350759 LOC100281525 LOC103846996 LOC100251232 LOC18106178 LOC25499535 LOC123158926 LOC123168171 LOC123148885 LOC123407498 LOC107948516 LOC107899197 LOC106419303 LOC106375466 LOC8062640 LOC102592275 LOC102615238 LOC100833736 LOC107817863 LOC107830538
Function* uncharacterized protein transferring glycosyl group transferase F-box protein At5g06550 F-box protein At5g06550 arginine-specific demethylase JMJ22 arginine-specific demethylase JMJ22 uncharacterized LOC100281525 F-box protein At5g06550 F-box protein At5g06550-like arginine-specific demethylase JMJ22 F-box protein At5g06550 F-box protein At5g06550 F-box protein At5g06550 F-box protein At5g06550 F-box protein At5g06550 F-box protein At5g06550 F-box protein At5g06550 F-box protein At5g06550-like F-box protein At5g06550 F-box protein At5g06550 F-box protein At5g06550 arginine-specific demethylase JMJ22 F-box protein At5g06550 arginine-specific demethylase JMJ22-like arginine-specific demethylase JMJ22
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00220 Arginine biosynthesis 2
sly00250 Alanine, aspartate and glutamate metabolism 2
sly00710 Carbon fixation by Calvin cycle 2
sly01200 Carbon metabolism 2
sly01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
osa00230 Purine metabolism 2
osa01210 2-Oxocarboxylic acid metabolism 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03010 Ribosome 2
nta03430 Mismatch repair 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03010 Ribosome 2
nta03430 Mismatch repair 2
nta03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5716618 830543 100817138 100782241 101267570 4350759 100281525 103846996 100251232 18106178 25499535 123158926 123168171 123148885 123407498 107948516 107899197 106419303 106375466 8062640 102592275 102615238 100833736 107817863 107830538
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