ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_12g486900v5	uncharacterized protein
ath-u.5	AT5G67220	FMN-linked oxidoreductases superfamily protein
gma-u.5	100789809	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
gma-u.5	100812753	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
sly-u.5	101247588	uncharacterized LOC101247588
sly-u.5	101245512	tRNA-dihydrouridine synthase 1-like protein
osa-u.5	4342049	uncharacterized LOC4342049
zma-u.5	100274382	FMN-linked oxidoreductase superfamily protein
bra-r.6	103837738	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
bra-r.6	103829527	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
vvi-u.5	100249291	uncharacterized LOC100249291
ppo-u.5	7483096	uncharacterized LOC7483096
mtr-u.5	25493484	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
tae-r.2	123148256	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
tae-r.2	123166974	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
tae-r.2	123156509	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
hvu-r.1	123410196	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
ghi-r.1	107932593	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
ghi-r.1	107931692	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
bna-r.1	106439919	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
bna-r.1	106390335	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
bna-r.1	106366303	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
sbi-r.1	8064984	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
sot-r.1	102583164	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
sot-r.1	102579683	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
cit-r.1	102626482	uncharacterized LOC102626482
bdi-r.1	100834475	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
nta-r.1	107810562	uncharacterized LOC107810562
nta-r.1	107817793	uncharacterized LOC107817793
nta-r.1	107820692	uncharacterized LOC107820692

Annotation

functional annotation

KEGG

GO BP

GO:0008033 [list] [network] tRNA processing

(105 genes)

IEA

GO CC

GO MF

GO:0017150 [list] [network] tRNA dihydrouridine synthase activity	(7 genes)	IEA
GO:0050660 [list] [network] flavin adenine dinucleotide binding	(95 genes)	IEA

Protein

XP_042918082.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 8, nucl 1, mito 1, pero 1

(predict for XP_042918082.1)

Subcellular
localization
TargetP

other 5, mito 3

(predict for XP_042918082.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_12g486900v5	ath-u.5 for AT5G67220	gma-u.5 for 100789809	gma-u.5 for 100812753	sly-u.5 for 101247588	sly-u.5 for 101245512	osa-u.5 for 4342049	zma-u.5 for 100274382	bra-r.6 for 103837738	bra-r.6 for 103829527	vvi-u.5 for 100249291	ppo-u.5 for 7483096	mtr-u.5 for 25493484	tae-r.2 for 123148256	tae-r.2 for 123166974	tae-r.2 for 123156509	hvu-r.1 for 123410196	ghi-r.1 for 107932593	ghi-r.1 for 107931692	bna-r.1 for 106439919	bna-r.1 for 106390335	bna-r.1 for 106366303	sbi-r.1 for 8064984	sot-r.1 for 102583164	sot-r.1 for 102579683	cit-r.1 for 102626482	bdi-r.1 for 100834475	nta-r.1 for 107810562	nta-r.1 for 107817793	nta-r.1 for 107820692

Ortholog

Ortholog ID: 7015

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

FMN-linked oxidoreductases superfamily protein

tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like

uncharacterized LOC101247588

tRNA-dihydrouridine synthase 1-like protein

uncharacterized LOC4342049

FMN-linked oxidoreductase superfamily protein

tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like

uncharacterized LOC100249291

uncharacterized LOC7483096

tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like

uncharacterized LOC102626482

tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like

uncharacterized LOC107810562

uncharacterized LOC107817793

uncharacterized LOC107798052

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01230	Biosynthesis of amino acids	4
ath01210	2-Oxocarboxylic acid metabolism	3
ath03083	Polycomb repressive complex	2
ath00270	Cysteine and methionine metabolism	2
ath00290	Valine, leucine and isoleucine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00230	Purine metabolism	2
gma00730	Thiamine metabolism	2
gma01232	Nucleotide metabolism	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03083	Polycomb repressive complex	2
sly00970	Aminoacyl-tRNA biosynthesis	2
sly03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00230	Purine metabolism	2
bdi00730	Thiamine metabolism	2
bdi01232	Nucleotide metabolism	2
bdi01240	Biosynthesis of cofactors	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03010	Ribosome	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta03013	Nucleocytoplasmic transport	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

5716635

836857

100789809

100812753

101247588

101245512

4342049

100274382

103837738

103829527

100249291

7483096

25493484

123148256

123166974

123156509

123410196

107932593

107931692

106390335

106366303

106360725

8064984

102583164

102579683

102626482

100834475

107810562

107817793

107798052

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_12g486900v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g486900v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	2	1	1	2	1	1	1	3	1	2	3	1	2	1	1	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_12g486900v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g486900v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**