ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_12g490850v5	uncharacterized protein
ath-u.5	AT4G27640	ARM repeat superfamily protein
gma-u.5	100815107	importin-4
gma-u.5	100795772	importin-4
sly-u.5	101252925	uncharacterized LOC101252925
osa-u.5	9269497	uncharacterized LOC9269497
zma-u.5	100383753	uncharacterized LOC100383753
bra-r.6	103867393	importin-4
bra-r.6	103861706	importin-4
vvi-u.5	100253220	uncharacterized LOC100253220
ppo-u.5	7492941	uncharacterized LOC7492941
ppo-u.5	7460688	uncharacterized LOC7460688
mtr-u.5	11425121	importin-4
tae-r.2	123092692	importin-4
tae-r.2	123085352	importin-4
hvu-r.1	123449098	importin-4
ghi-r.1	107955712	importin-4
ghi-r.1	107903940	importin-4
bna-r.1	106411079	importin-4
bna-r.1	106432421	importin-4
bna-r.1	106440966	importin-4
sbi-r.1	8078817	importin-4
sot-r.1	102606314	importin-4
cit-r.1	102617793	uncharacterized LOC102617793
bdi-r.1	100826070	importin-4
nta-r.1	107830495	putative importin subunit beta-4
nta-r.1	107799562	putative importin subunit beta-4

Annotation

functional annotation

KEGG

GO BP

GO:0006606 [list] [network] protein import into nucleus

(40 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus	(1576 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(2907 genes)	IEA

GO MF

GO:0061608 [list] [network] nuclear import signal receptor activity	(9 genes)	IEA
GO:0008139 [list] [network] nuclear localization sequence binding	(10 genes)	IEA
GO:0031267 [list] [network] small GTPase binding	(32 genes)	IEA

Protein

XP_042918022.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, vacu 1, E.R. 1, E.R._vacu 1

(predict for XP_042918022.1)

Subcellular
localization
TargetP

other 5, chlo 4

(predict for XP_042918022.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_12g490850v5	ath-u.5 for AT4G27640	gma-u.5 for 100815107	gma-u.5 for 100795772	sly-u.5 for 101252925	osa-u.5 for 9269497	zma-u.5 for 100383753	bra-r.6 for 103867393	bra-r.6 for 103861706	vvi-u.5 for 100253220	ppo-u.5 for 7492941	ppo-u.5 for 7460688	mtr-u.5 for 11425121	tae-r.2 for 123092692	tae-r.2 for 123085352	hvu-r.1 for 123449098	ghi-r.1 for 107955712	ghi-r.1 for 107903940	bna-r.1 for 106411079	bna-r.1 for 106432421	bna-r.1 for 106440966	sbi-r.1 for 8078817	sot-r.1 for 102606314	cit-r.1 for 102617793	bdi-r.1 for 100826070	nta-r.1 for 107830495	nta-r.1 for 107799562

Ortholog

Ortholog ID: 8561

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

ARM repeat superfamily protein

importin-4

uncharacterized LOC101252925

uncharacterized LOC9269497

uncharacterized LOC100383753

importin-4

uncharacterized LOC100253220

uncharacterized LOC7492941

uncharacterized LOC7460688

importin-4

uncharacterized LOC102617793

importin-4

putative importin subunit beta-4

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	9
gma00020	Citrate cycle (TCA cycle)	2
gma00630	Glyoxylate and dicarboxylate metabolism	2
gma01200	Carbon metabolism	2
gma01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	8
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03013	Nucleocytoplasmic transport	5
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	3
osa03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	5
zma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	7
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	6
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	4
ppo03018	RNA degradation	3
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	8
tae03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	8
tae03013	Nucleocytoplasmic transport	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	6
hvu03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	12
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	12
ghi04075	Plant hormone signal transduction	4
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	3
sbi03008	Ribosome biogenesis in eukaryotes	3
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	5
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	7
cit03015	mRNA surveillance pathway	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	4
bdi03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	9

Expression

Expression pattern

Entrez Gene ID^*

5716711

828875

100815107

100795772

101252925

9269497

100383753

103867393

103861706

100253220

7492941

7460688

11425121

123092692

123085352

123449098

107955712

107903940

106411079

106440966

106446115

8078817

102606314

102617793

100826070

107830495

107799562

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_12g490850v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g490850v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	1	1	1	2	1	2	1	2	1	2	3	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_12g490850v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g490850v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**