ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_17g739450v5	uncharacterized protein
ath-u.5	NF-YB12	nuclear factor Y, subunit B12
ath-u.5	NF-YB13	nuclear factor Y, subunit B13
gma-u.5	100797580	class 2 transcription repressor NC2 beta 4
gma-u.5	DR1	class 2 transcription repressor NC2 beta 2
gma-u.5	100798439	class 2 transcription repressor NC2 beta 3
sly-u.5	101244170	protein Dr1 homolog
sly-u.5	101265446	protein Dr1 homolog
osa-u.5	4345446	protein Dr1 homolog
zma-u.5	100191260	uncharacterized LOC100191260
zma-u.5	100274041	uncharacterized LOC100274041
bra-r.6	103855765	protein Dr1 homolog
bra-r.6	103847137	protein Dr1 homolog
bra-r.6	103837349	protein Dr1 homolog
vvi-u.5	100242295	protein Dr1 homolog
ppo-u.5	7490081	protein Dr1 homolog
ppo-u.5	18105691	protein Dr1 homolog
mtr-u.5	25486801	protein Dr1 homolog
mtr-u.5	11443628	protein Dr1 homolog
tae-r.2	123080438	protein Dr1 homolog
tae-r.2	123072170	protein Dr1 homolog
tae-r.2	542889	nuclear transcription factor Y subunit beta
hvu-r.1	123445347	nuclear transcription factor Y subunit beta-like
ghi-r.1	121206446	protein Dr1 homolog
ghi-r.1	107926602	protein Dr1 homolog
ghi-r.1	107931510	protein Dr1 homolog
bna-r.1	106360524	protein Dr1 homolog
bna-r.1	106419066	protein Dr1 homolog
bna-r.1	106433879	protein Dr1 homolog
sbi-r.1	8070009	protein Dr1 homolog
sot-r.1	102600380	protein Dr1 homolog
sot-r.1	102597292	protein Dr1 homolog
sot-r.1	102598701	protein Dr1 homolog
cit-r.1	102621947	protein Dr1 homolog
bdi-r.1	100835335	nuclear transcription factor Y subunit beta
nta-r.1	107809435	protein Dr1 homolog
nta-r.1	107809378	protein Dr1 homolog
nta-r.1	107807263	protein Dr1 homolog

Top 50 coexpressed genes to CHLRE_17g739450v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_17g739450v5 (cre-r.1 coexpression data)

CoexMap"5717109"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0051123 [list] [network] RNA polymerase II preinitiation complex assembly	(9 genes)	IEA
GO:0000122 [list] [network] negative regulation of transcription by RNA polymerase II	(12 genes)	IEA
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II	(47 genes)	IEA
GO:0006338 [list] [network] chromatin remodeling	(106 genes)	IEA

GO CC

GO:0017054 [list] [network] negative cofactor 2 complex

(1 genes)

IEA

GO MF

GO:0001046 [list] [network] core promoter sequence-specific DNA binding	(3 genes)	IEA
GO:0017025 [list] [network] TBP-class protein binding	(8 genes)	IEA
GO:0140223 [list] [network] general transcription initiation factor activity	(17 genes)	IEA
GO:0046982 [list] [network] protein heterodimerization activity	(139 genes)	IEA

Protein

XP_001691659.2 [sequence] [blastp]

Subcellular
localization
wolf

mito 6, nucl 4

(predict for XP_001691659.2)

Subcellular
localization
TargetP

other 8

(predict for XP_001691659.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_17g739450v5	ath-u.5 for NF-YB12	ath-u.5 for NF-YB13	gma-u.5 for 100797580	gma-u.5 for DR1	gma-u.5 for 100798439	sly-u.5 for 101244170	sly-u.5 for 101265446	osa-u.5 for 4345446	zma-u.5 for 100191260	zma-u.5 for 100274041	bra-r.6 for 103855765	bra-r.6 for 103847137	bra-r.6 for 103837349	vvi-u.5 for 100242295	ppo-u.5 for 7490081	ppo-u.5 for 18105691	mtr-u.5 for 25486801	mtr-u.5 for 11443628	tae-r.2 for 123080438	tae-r.2 for 123072170	tae-r.2 for 542889	hvu-r.1 for 123445347	ghi-r.1 for 121206446	ghi-r.1 for 107926602	ghi-r.1 for 107931510	bna-r.1 for 106360524	bna-r.1 for 106419066	bna-r.1 for 106433879	sbi-r.1 for 8070009	sot-r.1 for 102600380	sot-r.1 for 102597292	sot-r.1 for 102598701	cit-r.1 for 102621947	bdi-r.1 for 100835335	nta-r.1 for 107809435	nta-r.1 for 107809378	nta-r.1 for 107807263

Ortholog

Ortholog ID: 4119

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

CHLRE_17g739450v5

NF-YB12

NF-YB13

DR1

Function^*

uncharacterized protein

nuclear factor Y, subunit B12

nuclear factor Y, subunit B13

class 2 transcription repressor NC2 beta 4

class 2 transcription repressor NC2 beta 2

class 2 transcription repressor NC2 beta 3

protein Dr1 homolog

uncharacterized LOC100191260

uncharacterized LOC100274041

protein Dr1 homolog

nuclear transcription factor Y subunit beta

nuclear transcription factor Y subunit beta-like

protein Dr1 homolog

nuclear transcription factor Y subunit beta

protein Dr1 homolog

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	2
cre00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00510	N-Glycan biosynthesis	2
gma00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03020	RNA polymerase	2
bra03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	4
vvi03040	Spliceosome	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04136	Autophagy - other	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	3
tae04148	Efferocytosis	2
tae04517	IgSF CAM signaling	2
tae04620	Toll-like receptor signaling pathway	2
tae04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	4
tae04148	Efferocytosis	3
tae04517	IgSF CAM signaling	3
tae04620	Toll-like receptor signaling pathway	3
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00760	Nicotinate and nicotinamide metabolism	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3
cit04136	Autophagy - other	2
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	2
bdi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	10
nta04141	Protein processing in endoplasmic reticulum	6
nta03083	Polycomb repressive complex	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	7
nta03083	Polycomb repressive complex	5
nta04141	Protein processing in endoplasmic reticulum	5

Expression

Expression pattern

Entrez Gene ID^*

5717109

830715

832373

100797580

547635

100798439

101244170

101265446

4345446

100191260

100274041

103855765

103847137

103837349

100242295

7490081

18105691

25486801

11443628

123080438

123072170

542889

123445347

121206446

107926602

107931510

106419066

106433879

106366058

8070009

102600380

102597292

102598701

102621947

100835335

107809378

107807263

107808072

The preparation time of this page was 0.2 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	2	3	2	1	2	3	1	2	2	3	1	3	3	1	3	1	1	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_17g739450v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_17g739450v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**