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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_17g706300v5   uncharacterized protein 
 ath-u.5   UVH6   RAD3-like DNA-binding helicase protein 
 gma-u.5   100806384   general transcription and DNA repair factor IIH helicase subunit XPD 
 gma-u.5   100801650   general transcription and DNA repair factor IIH helicase subunit XPD 
 sly-u.5   101255497   general transcription and DNA repair factor IIH helicase subunit XPD 
 osa-u.5   4337788   general transcription and DNA repair factor IIH helicase subunit XPD 
 zma-u.5   100285960   DNA repair helicase UVH6 
 bra-r.6   103836626   general transcription and DNA repair factor IIH helicase subunit XPD 
 vvi-u.5   100240869   general transcription and DNA repair factor IIH helicase subunit XPD 
 ppo-u.5   7480701   general transcription and DNA repair factor IIH helicase subunit XPD 
 mtr-u.5   25487506   general transcription and DNA repair factor IIH helicase subunit XPD 
 tae-r.2   123111455   general transcription and DNA repair factor IIH helicase subunit XPD 
 tae-r.2   123180416   general transcription and DNA repair factor IIH helicase subunit XPD 
 tae-r.2   123191077   general transcription and DNA repair factor IIH helicase subunit XPD 
 hvu-r.1   123424653   general transcription and DNA repair factor IIH helicase subunit XPD 
 ghi-r.1   107912430   general transcription and DNA repair factor IIH helicase subunit XPD 
 ghi-r.1   107914545   general transcription and DNA repair factor IIH helicase subunit XPD 
 ghi-r.1   107924032   general transcription and DNA repair factor IIH helicase subunit XPD 
 bna-r.1   106401479   general transcription and DNA repair factor IIH helicase subunit XPD 
 bna-r.1   106402169   general transcription and DNA repair factor IIH helicase subunit XPD-like 
 sbi-r.1   8075957   DNA repair helicase XPD 
 sot-r.1   102581333   DNA repair helicase UVH6 
 cit-r.1   102618714   general transcription and DNA repair factor IIH helicase subunit XPD 
 bdi-r.1   100833387   general transcription and DNA repair factor IIH helicase subunit XPD 
 bdi-r.1   100824230   general transcription and DNA repair factor IIH helicase subunit XPD 
 nta-r.1   107793390   general transcription and DNA repair factor IIH helicase subunit XPD 
 nta-r.1   142161633   general transcription and DNA repair factor IIH helicase subunit XPD-like 

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Top 50 coexpressed genes to CHLRE_17g706300v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_17g706300v5 (cre-r.1 coexpression data)

CoexMap"5717204"


creCHLRE_17g706300v5 | Entrez gene ID : 5717204    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 1 1 1 1 3 1 3 2 1 1 1 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03022 [list] [network] Basal transcription factors (19 genes)
cre03420 [list] [network] Nucleotide excision repair (42 genes)
GO BP
GO:0045951 [list] [network] positive regulation of mitotic recombination  (1 genes)  IEA  
GO:0006289 [list] [network] nucleotide-excision repair  (28 genes)  IEA  
GO:0006366 [list] [network] transcription by RNA polymerase II  (50 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003684 [list] [network] damaged DNA binding  (27 genes)  IEA  
GO:0003678 [list] [network] DNA helicase activity  (49 genes)  IEA  
GO:0016818 [list] [network] hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides  (432 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042914465.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 5  (predict for XP_042914465.1)
Subcellular
localization
TargetP
other 5  (predict for XP_042914465.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_17g706300v5
ath-u.5
for
UVH6
gma-u.5
for
100806384
gma-u.5
for
100801650
sly-u.5
for
101255497
osa-u.5
for
4337788
zma-u.5
for
100285960
bra-r.6
for
103836626
vvi-u.5
for
100240869
ppo-u.5
for
7480701
mtr-u.5
for
25487506
tae-r.2
for
123111455
tae-r.2
for
123180416
tae-r.2
for
123191077
hvu-r.1
for
123424653
ghi-r.1
for
107912430
ghi-r.1
for
107914545
ghi-r.1
for
107924032
bna-r.1
for
106401479
bna-r.1
for
106402169
sbi-r.1
for
8075957
sot-r.1
for
102581333
cit-r.1
for
102618714
bdi-r.1
for
100833387
bdi-r.1
for
100824230
nta-r.1
for
107793390
nta-r.1
for
142161633


Ortholog ID: 9236
Species cre ath gma gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi ghi bna bna sbi sot cit bdi bdi nta nta
Symbol CHLRE_17g706300v5 UVH6 LOC100806384 LOC100801650 LOC101255497 LOC4337788 LOC100285960 LOC103836626 LOC100240869 LOC7480701 LOC25487506 LOC123111455 LOC123180416 LOC123191077 LOC123424653 LOC107912430 LOC107914545 LOC107924032 LOC106401479 LOC106402169 LOC8075957 LOC102581333 LOC102618714 LOC100833387 LOC100824230 LOC107793390 LOC142161633
Function* uncharacterized protein RAD3-like DNA-binding helicase protein general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD DNA repair helicase UVH6 general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD-like DNA repair helicase XPD DNA repair helicase UVH6 general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 2
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 4
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03015 mRNA surveillance pathway 3
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03420 Nucleotide excision repair 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 7
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 5
tae03013 Nucleocytoplasmic transport 5
tae03018 RNA degradation 3
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 4
ghi03022 Basal transcription factors 3
ghi03410 Base excision repair 3
ghi00780 Biotin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 5
ghi03410 Base excision repair 4
ghi03022 Basal transcription factors 3
ghi00780 Biotin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 4
ghi03022 Basal transcription factors 3
ghi03410 Base excision repair 3
ghi00780 Biotin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03250 Viral life cycle - HIV-1 3
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03250 Viral life cycle - HIV-1 3
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03022 Basal transcription factors 2
bdi03420 Nucleotide excision repair 2
bdi03040 Spliceosome 2
bdi00061 Fatty acid biosynthesis 2
bdi00062 Fatty acid elongation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03022 Basal transcription factors 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00531 Glycosaminoglycan degradation 2
nta04142 Lysosome 2
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00531 Glycosaminoglycan degradation 2
nta04142 Lysosome 2
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5717204 839557 100806384 100801650 101255497 4337788 100285960 103836626 100240869 7480701 25487506 123111455 123180416 123191077 123424653 107912430 107914545 107924032 106401479 106402169 8075957 102581333 102618714 100833387 100824230 107793390 142161633
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