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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g184651v5   uncharacterized protein 
 ath-u.5   RAD51D   DNA repair RAD51-like protein 
 gma-u.5   100780427   DNA repair protein RAD51 homolog 4-like 
 sly-u.5   101264490   DNA repair protein RAD51 homolog 4 
 osa-u.5   4346376   DNA repair protein RAD51 homolog 4 
 zma-u.5   100282783   uncharacterized LOC100282783 
 vvi-u.5   100257115   DNA repair protein RAD51 homolog 4 
 mtr-u.5   25492474   DNA repair protein RAD51 homolog 4 
 tae-r.2   100192176   DNA repair protein RAD51 homolog 4 
 ghi-r.1   107906167   DNA repair protein RAD51 homolog 4 
 ghi-r.1   107959080   DNA repair protein RAD51 homolog 4 
 bdi-r.1   100827134   DNA repair protein RAD51 homolog 4 
 nta-r.1   107806596   DNA repair protein RAD51 homolog 4 
 nta-r.1   107785938   DNA repair protein RAD51 homolog 4-like 

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Top 50 coexpressed genes to CHLRE_03g184651v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g184651v5 (cre-r.1 coexpression data)

CoexMap"5717423"


creCHLRE_03g184651v5 | Entrez gene ID : 5717423    
Species cre ath gma sly osa zma vvi mtr tae ghi bdi nta bra ppo hvu bna cit sot sbi
Paralog 1 1 1 1 1 1 1 1 1 2 1 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042148 [list] [network] DNA strand invasion  (5 genes)  IEA  
GO:0007131 [list] [network] reciprocal meiotic recombination  (19 genes)  IEA  
GO:0000723 [list] [network] telomere maintenance  (30 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (82 genes)  IEA  
GO CC
GO:0033063 [list] [network] Rad51B-Rad51C-Rad51D-XRCC2 complex  (4 genes)  IEA  
GO:0005657 [list] [network] replication fork  (33 genes)  IEA  
GO:0005813 [list] [network] centrosome  (109 genes)  IEA  
GO MF
GO:0000400 [list] [network] four-way junction DNA binding  (5 genes)  IEA  
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (19 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (46 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042926218.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_042926218.1)
Subcellular
localization
TargetP
scret 8,  other 4  (predict for XP_042926218.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g184651v5
ath-u.5
for
RAD51D
gma-u.5
for
100780427
sly-u.5
for
101264490
osa-u.5
for
4346376
zma-u.5
for
100282783
vvi-u.5
for
100257115
mtr-u.5
for
25492474
tae-r.2
for
100192176
ghi-r.1
for
107906167
ghi-r.1
for
107959080
bdi-r.1
for
100827134
nta-r.1
for
107806596
nta-r.1
for
107785938


Ortholog ID: 11460
Species cre ath gma sly osa zma vvi mtr tae ghi ghi bdi nta nta
Symbol CHLRE_03g184651v5 RAD51D LOC100780427 LOC101264490 LOC4346376 LOC100282783 LOC100257115 LOC25492474 LOC100192176 LOC107906167 LOC107959080 LOC100827134 LOC107806596 LOC107785938
Function* uncharacterized protein DNA repair RAD51-like protein DNA repair protein RAD51 homolog 4-like DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 uncharacterized LOC100282783 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 9
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5717423 837289 100780427 101264490 4346376 100282783 100257115 25492474 100192176 107906167 107959080 100827134 107806596 107785938
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