ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_03g190100v5	uncharacterized protein
ath-u.5	EIF3B-2	eukaryotic translation initiation factor 3B-2
ath-u.5	TIF3B1	translation initiation factor 3B1
gma-u.5	100817394	eukaryotic translation initiation factor 3 subunit B
gma-u.5	100779711	eukaryotic translation initiation factor 3 subunit B
sly-u.5	101267059	eukaryotic translation initiation factor 3 subunit B
osa-u.5	4349446	eukaryotic translation initiation factor 3 subunit B
zma-u.5	100216593	Eukaryotic translation initiation factor 3 subunit B
bra-r.6	103864588	eukaryotic translation initiation factor 3 subunit B
bra-r.6	103842228	eukaryotic translation initiation factor 3 subunit B
vvi-u.5	100244090	eukaryotic translation initiation factor 3 subunit B
ppo-u.5	18107516	eukaryotic translation initiation factor 3 subunit B
ppo-u.5	7459900	eukaryotic translation initiation factor 3 subunit B
mtr-u.5	11429932	eukaryotic translation initiation factor 3 subunit B
tae-r.2	123086809	eukaryotic translation initiation factor 3 subunit B
tae-r.2	123096166	eukaryotic translation initiation factor 3 subunit B
tae-r.2	123105427	eukaryotic translation initiation factor 3 subunit B
hvu-r.1	123447805	eukaryotic translation initiation factor 3 subunit B-like
hvu-r.1	123452734	eukaryotic translation initiation factor 3 subunit B-like
ghi-r.1	107945214	eukaryotic translation initiation factor 3 subunit B
ghi-r.1	107938504	eukaryotic translation initiation factor 3 subunit B
ghi-r.1	107928605	eukaryotic translation initiation factor 3 subunit B
bna-r.1	106368593	eukaryotic translation initiation factor 3 subunit B
bna-r.1	111215058	eukaryotic translation initiation factor 3 subunit B
bna-r.1	106391076	eukaryotic translation initiation factor 3 subunit B
sbi-r.1	8055159	eukaryotic translation initiation factor 3 subunit B
sot-r.1	102606334	eukaryotic translation initiation factor 3 subunit B
cit-r.1	102614274	eukaryotic translation initiation factor 3 subunit B
bdi-r.1	100834858	eukaryotic translation initiation factor 3 subunit B
nta-r.1	107806139	eukaryotic translation initiation factor 3 subunit B-like
nta-r.1	107817529	eukaryotic translation initiation factor 3 subunit B-like
nta-r.1	142161872	eukaryotic translation initiation factor 3 subunit B-like

Top 50 coexpressed genes to CHLRE_03g190100v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_03g190100v5 (cre-r.1 coexpression data)

CoexMap"5717518"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006413 [list] [network] translational initiation

(30 genes)

IEA

GO CC

GO:0005852 [list] [network] eukaryotic translation initiation factor 3 complex

(13 genes)

IEA

GO MF

GO:0031369 [list] [network] translation initiation factor binding	(9 genes)	IEA
GO:0003743 [list] [network] translation initiation factor activity	(37 genes)	IEA
GO:0003723 [list] [network] RNA binding	(670 genes)	IEA

Protein

XP_001691870.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 4

(predict for XP_001691870.1)

Subcellular
localization
TargetP

other 8

(predict for XP_001691870.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_03g190100v5	ath-u.5 for EIF3B-2	ath-u.5 for TIF3B1	gma-u.5 for 100817394	gma-u.5 for 100779711	sly-u.5 for 101267059	osa-u.5 for 4349446	zma-u.5 for 100216593	bra-r.6 for 103864588	bra-r.6 for 103842228	vvi-u.5 for 100244090	ppo-u.5 for 18107516	ppo-u.5 for 7459900	mtr-u.5 for 11429932	tae-r.2 for 123086809	tae-r.2 for 123096166	tae-r.2 for 123105427	hvu-r.1 for 123447805	hvu-r.1 for 123452734	ghi-r.1 for 107945214	ghi-r.1 for 107938504	ghi-r.1 for 107928605	bna-r.1 for 106368593	bna-r.1 for 111215058	bna-r.1 for 106391076	sbi-r.1 for 8055159	sot-r.1 for 102606334	cit-r.1 for 102614274	bdi-r.1 for 100834858	nta-r.1 for 107806139	nta-r.1 for 107817529	nta-r.1 for 142161872

Ortholog

Ortholog ID: 5845

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

CHLRE_03g190100v5

EIF3B-2

TIF3B1

Function^*

uncharacterized protein

eukaryotic translation initiation factor 3B-2

translation initiation factor 3B1

eukaryotic translation initiation factor 3 subunit B

Eukaryotic translation initiation factor 3 subunit B

eukaryotic translation initiation factor 3 subunit B

eukaryotic translation initiation factor 3 subunit B-like

eukaryotic translation initiation factor 3 subunit B

eukaryotic translation initiation factor 3 subunit B-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	3
gma00970	Aminoacyl-tRNA biosynthesis	2
gma03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	6
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	5
zma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	9
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	4
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	3
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	11
hvu00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2
ghi00970	Aminoacyl-tRNA biosynthesis	2
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03060	Protein export	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi03040	Spliceosome	2
ghi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00970	Aminoacyl-tRNA biosynthesis	3
sbi03013	Nucleocytoplasmic transport	2
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit00970	Aminoacyl-tRNA biosynthesis	2
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	3

Expression

Expression pattern

Entrez Gene ID^*

5717518

832647

832826

100817394

100779711

101267059

4349446

100216593

103864588

103842228

100244090

18107516

7459900

11429932

123096166

123105427

123123225

123447805

123452734

107938504

107928605

106368593

111215058

106391076

8055159

102606334

102614274

100834858

107806139

107817529

142161872

The preparation time of this page was 0.1 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	2	2	1	1	1	2	1	2	1	3	2	3	3	1	1	1	1	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_03g190100v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_03g190100v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**