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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g680900v5   uncharacterized protein 
 ath-u.5   NRPB1   RNA polymerase II large subunit 
 gma-u.5   100778777   DNA-directed RNA polymerase II subunit RPB1 
 gma-u.5   100812506   DNA-directed RNA polymerase II subunit RPB1 
 gma-u.5   100804975   DNA-directed RNA polymerase II subunit RPB1 
 sly-u.5   778257   DNA-directed RNA polymerase II subunit RPB1 
 osa-u.5   4337831   DNA-directed RNA polymerase II subunit RPB1 
 osa-u.5   9267835   DNA-directed RNA polymerase II subunit RPB1 
 zma-u.5   541967   DNA-directed RNA polymerase II subunit 1 
 bra-r.6   103834927   DNA-directed RNA polymerase II subunit 1 
 bra-r.6   103873389   DNA-directed RNA polymerase II subunit 1 
 vvi-u.5   100264310   DNA-directed RNA polymerase II subunit RPB1 
 ppo-u.5   18099128   DNA-directed RNA polymerase II subunit RPB1 
 mtr-u.5   11434004   DNA-directed RNA polymerase II subunit RPB1 
 hvu-r.1   123407901   DNA-directed RNA polymerase II subunit RPB1-like 
 ghi-r.1   107912855   DNA-directed RNA polymerase II subunit RPB1 
 ghi-r.1   107909491   DNA-directed RNA polymerase II subunit RPB1 
 ghi-r.1   107916835   DNA-directed RNA polymerase II subunit RPB1 
 bna-r.1   106351723   DNA-directed RNA polymerase II subunit RPB1-like 
 bna-r.1   106354225   DNA-directed RNA polymerase II subunit RPB1-like 
 bna-r.1   106361294   DNA-directed RNA polymerase II subunit RPB1 
 sbi-r.1   8076592   DNA-directed RNA polymerase II subunit 1 
 sbi-r.1   8064784   DNA-directed RNA polymerase II subunit 1 
 sot-r.1   RPB1   DNA-directed RNA polymerase II subunit 1 
 cit-r.1   102617026   DNA-directed RNA polymerase II subunit RPB1 
 bdi-r.1   100841250   DNA-directed RNA polymerase II subunit 1 
 nta-r.1   107820355   DNA-directed RNA polymerase II subunit RPB1 
 nta-r.1   107766442   DNA-directed RNA polymerase II subunit RPB1 

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Top 50 coexpressed genes to CHLRE_16g680900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g680900v5 (cre-r.1 coexpression data)

CoexMap"5717546"


creCHLRE_16g680900v5 | Entrez gene ID : 5717546      
Species cre ath gma sly osa zma bra vvi ppo mtr hvu ghi bna sbi sot cit bdi nta tae
Paralog 1 1 3 1 2 1 2 1 1 1 1 3 3 2 1 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03020 [list] [network] RNA polymerase (29 genes)
cre03420 [list] [network] Nucleotide excision repair (42 genes)
GO BP
GO:0006366 [list] [network] transcription by RNA polymerase II  (50 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (12 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
Protein XP_042916018.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 2,  nucl 1,  E.R. 1,  mito_plas 1  (predict for XP_042916018.1)
Subcellular
localization
TargetP
other 5,  mito 4  (predict for XP_042916018.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g680900v5
ath-u.5
for
NRPB1
gma-u.5
for
100778777
gma-u.5
for
100812506
gma-u.5
for
100804975
sly-u.5
for
778257
osa-u.5
for
4337831
osa-u.5
for
9267835
zma-u.5
for
541967
bra-r.6
for
103834927
bra-r.6
for
103873389
vvi-u.5
for
100264310
ppo-u.5
for
18099128
mtr-u.5
for
11434004
hvu-r.1
for
123407901
ghi-r.1
for
107912855
ghi-r.1
for
107909491
ghi-r.1
for
107916835
bna-r.1
for
106351723
bna-r.1
for
106354225
bna-r.1
for
106361294
sbi-r.1
for
8076592
sbi-r.1
for
8064784
sot-r.1
for
RPB1
cit-r.1
for
102617026
bdi-r.1
for
100841250
nta-r.1
for
107820355
nta-r.1
for
107766442


Ortholog ID: 4428
Species cre ath gma gma gma sly osa osa zma bra bra vvi ppo mtr tae hvu ghi ghi ghi bna bna bna sbi sbi sot cit bdi nta nta
Symbol CHLRE_16g680900v5 NRPB1 LOC100778777 LOC100812506 LOC100804975 LOC778257 LOC4337831 LOC9267835 LOC541967 LOC103834927 LOC103873389 LOC100264310 LOC18099128 LOC11434004 LOC123171586 LOC123407901 LOC107912855 LOC107909491 LOC107916835 LOC106351723 LOC106354225 LOC125583785 LOC8076592 LOC8064784 RPB1 LOC102617026 LOC100841250 LOC107820355 LOC107766442
Function* uncharacterized protein RNA polymerase II large subunit DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit 1 DNA-directed RNA polymerase II subunit 1 DNA-directed RNA polymerase II subunit 1 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB1-like DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB1-like DNA-directed RNA polymerase II subunit RPB1-like DNA-directed RNA polymerase II subunit RPB1-like DNA-directed RNA polymerase II subunit 1 DNA-directed RNA polymerase II subunit 1 DNA-directed RNA polymerase II subunit 1 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit 1 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 7
cre03020 RNA polymerase 3
cre03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma03020 RNA polymerase 3
gma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03015 mRNA surveillance pathway 2
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma03020 RNA polymerase 3
gma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03250 Viral life cycle - HIV-1 2
sly03083 Polycomb repressive complex 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03250 Viral life cycle - HIV-1 3
ppo03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
bna04120 Ubiquitin mediated proteolysis 3
bna00020 Citrate cycle (TCA cycle) 2
bna00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
bna04120 Ubiquitin mediated proteolysis 3
bna00020 Citrate cycle (TCA cycle) 2
bna00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
bna04120 Ubiquitin mediated proteolysis 3
bna00020 Citrate cycle (TCA cycle) 2
bna00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 4
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5717546 829734 100778777 100812506 100804975 778257 4337831 9267835 541967 103834927 103873389 100264310 18099128 11434004 123171586 123407901 107912855 107909491 107916835 106351723 106354225 125583785 8076592 8064784 102578707 102617026 100841250 107820355 107766442
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