ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_03g196651v5	uncharacterized protein
ath-u.5	ERCC1	nucleotide repair protein
gma-u.5	100777022	DNA excision repair protein ERCC-1
sly-u.5	101261110	DNA excision repair protein ERCC-1
osa-u.5	4349131	DNA excision repair protein ERCC-1
zma-u.5	100192592	DNA excision repair protein ERCC-1
bra-r.6	103870844	DNA excision repair protein ERCC-1
vvi-u.5	100244316	DNA excision repair protein ERCC-1
ppo-u.5	18098811	DNA excision repair protein ERCC-1
mtr-u.5	11412075	DNA excision repair protein ERCC-1
tae-r.2	123124394	DNA excision repair protein ERCC-1
tae-r.2	123181345	DNA excision repair protein ERCC-1
tae-r.2	123048899	DNA excision repair protein ERCC-1
hvu-r.1	123434772	DNA excision repair protein ERCC-1
ghi-r.1	107889799	DNA excision repair protein ERCC-1
ghi-r.1	107893275	DNA excision repair protein ERCC-1
bna-r.1	106453031	DNA excision repair protein ERCC-1
bna-r.1	125587973	DNA excision repair protein ERCC-1-like
sbi-r.1	8065686	DNA excision repair protein ERCC-1
sot-r.1	102603702	DNA excision repair protein ERCC-1
cit-r.1	102623615	DNA excision repair protein ERCC-1
bdi-r.1	100833808	DNA excision repair protein ERCC-1
nta-r.1	107776580	DNA excision repair protein ERCC-1
nta-r.1	107787358	DNA excision repair protein ERCC-1

Annotation

functional annotation

KEGG

cre03420 [list] [network] Nucleotide excision repair (42 genes)

cre03460 [list] [network] Fanconi anemia pathway (16 genes)

GO BP

GO:0000710 [list] [network] meiotic mismatch repair	(1 genes)	IEA
GO:0070914 [list] [network] UV-damage excision repair	(2 genes)	IEA
GO:0006312 [list] [network] mitotic recombination	(9 genes)	IEA
GO:0006289 [list] [network] nucleotide-excision repair	(28 genes)	IEA

GO CC

GO:0070522 [list] [network] ERCC4-ERCC1 complex	(1 genes)	IEA
GO:0000110 [list] [network] nucleotide-excision repair factor 1 complex	(2 genes)	IEA
GO:0005634 [list] [network] nucleus	(1576 genes)	IEA

GO MF

GO:0003684 [list] [network] damaged DNA binding	(27 genes)	IEA
GO:0003697 [list] [network] single-stranded DNA binding	(46 genes)	IEA

Protein

XP_042926388.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, extr 1, pero 1

(predict for XP_042926388.1)

Subcellular
localization
TargetP

chlo 5, other 3

(predict for XP_042926388.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_03g196651v5	ath-u.5 for ERCC1	gma-u.5 for 100777022	sly-u.5 for 101261110	osa-u.5 for 4349131	zma-u.5 for 100192592	bra-r.6 for 103870844	vvi-u.5 for 100244316	ppo-u.5 for 18098811	mtr-u.5 for 11412075	tae-r.2 for 123124394	tae-r.2 for 123181345	tae-r.2 for 123048899	hvu-r.1 for 123434772	ghi-r.1 for 107889799	ghi-r.1 for 107893275	bna-r.1 for 106453031	bna-r.1 for 125587973	sbi-r.1 for 8065686	sot-r.1 for 102603702	cit-r.1 for 102623615	bdi-r.1 for 100833808	nta-r.1 for 107776580	nta-r.1 for 107787358

Ortholog

Ortholog ID: 10063

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

ERCC1

Function^*

uncharacterized protein

nucleotide repair protein

DNA excision repair protein ERCC-1

DNA excision repair protein ERCC-1-like

DNA excision repair protein ERCC-1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae03420	Nucleotide excision repair	3
tae03460	Fanconi anemia pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae03420	Nucleotide excision repair	3
tae03460	Fanconi anemia pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	3
tae03082	ATP-dependent chromatin remodeling	3
tae03420	Nucleotide excision repair	3
tae03460	Fanconi anemia pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03420	Nucleotide excision repair	2
hvu03018	RNA degradation	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03420	Nucleotide excision repair	2
ghi03460	Fanconi anemia pathway	2
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03420	Nucleotide excision repair	2
ghi03460	Fanconi anemia pathway	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	5
bna03022	Basal transcription factors	4
bna03420	Nucleotide excision repair	2
bna03460	Fanconi anemia pathway	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	4
bna03420	Nucleotide excision repair	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	6
cit03008	Ribosome biogenesis in eukaryotes	5
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2
nta03420	Nucleotide excision repair	2
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00510	N-Glycan biosynthesis	2
nta00513	Various types of N-glycan biosynthesis	2
nta03420	Nucleotide excision repair	2
nta03460	Fanconi anemia pathway	2

Expression

Expression pattern

Entrez Gene ID^*

5718766

819685

100777022

101261110

4349131

100192592

103870844

100244316

18098811

11412075

123124394

123181345

123048899

123434772

107889799

107893275

106453031

125587973

8065686

102603702

102623615

100833808

107776580

107787358

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_03g196651v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_03g196651v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	1	1	1	1	1	1	1	1	3	1	2	2	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_03g196651v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_03g196651v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**