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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g207900v5   uncharacterized protein 
 ath-u.5   CYCA1;1   Cyclin A1;1 
 gma-u.5   CYCA1;1   mitotic cyclin a2-type 
 gma-u.5   100776207   cyclin-A1-1-like 
 gma-u.5   100789565   cyclin-A1-1 
 sly-u.5   CycA1   cyclin A1 
 osa-u.5   9268829   cyclin-A1-3-like 
 osa-u.5   4338177   cyclin-A1-4-like 
 zma-u.5   103649996   cyclin-A1-1-like 
 zma-u.5   103635708   cyclin-A1-4 
 zma-u.5   542336   cyclin 2 
 bra-r.6   103851094   cyclin-A1-1 
 bra-r.6   103868732   cyclin-A1-1 
 vvi-u.5   100250590   cyclin-A1-1 
 ppo-u.5   7460975   cyclin-A1-1 
 ppo-u.5   18096203   cyclin-A1-1 
 mtr-u.5   25489689   cyclin-A1-1 
 tae-r.2   123078098   cyclin-A1-4 
 tae-r.2   123060815   cyclin-A1-2 
 tae-r.2   123180860   cyclin-A1-4 
 hvu-r.1   123443271   cyclin-A1-2-like 
 ghi-r.1   107951959   cyclin-A1-1 
 ghi-r.1   121229515   cyclin-A1-1 
 ghi-r.1   121210909   cyclin-A1-1 
 bna-r.1   106354423   cyclin-A1-1 
 bna-r.1   111213687   cyclin-A1-1-like 
 sbi-r.1   8054654   cyclin-A1-1 
 sbi-r.1   8078082   cyclin-A1-3 
 sot-r.1   102582879   cyclin-A1-4 
 cit-r.1   102617267   cyclin-A1-1 
 cit-r.1   102616765   cyclin-A1-4-like 
 bdi-r.1   100822112   cyclin-A1-4-like 
 bdi-r.1   100845679   cyclin-A1-1-like 
 bdi-r.1   100844452   cyclin-A1-1-like 
 nta-r.1   107783616   cyclin-A1-4-like 
 nta-r.1   107794571   cyclin-A1-4-like 

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Top 50 coexpressed genes to CHLRE_03g207900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g207900v5 (cre-r.1 coexpression data)

CoexMap"5718813"


creCHLRE_03g207900v5 | Entrez gene ID : 5718813      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 3 1 2 3 2 1 2 1 3 1 3 2 2 1 2 3 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity  (12 genes)  IEA  
GO:0044772 [list] [network] mitotic cell cycle phase transition  (15 genes)  IEA  
GO CC
GO:0000307 [list] [network] cyclin-dependent protein kinase holoenzyme complex  (27 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity  (15 genes)  IEA  
Protein XP_001693167.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  vacu 1  (predict for XP_001693167.1)
Subcellular
localization
TargetP
chlo 3  (predict for XP_001693167.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g207900v5
ath-u.5
for
CYCA1;1
gma-u.5
for
CYCA1;1
gma-u.5
for
100776207
gma-u.5
for
100789565
sly-u.5
for
CycA1
osa-u.5
for
9268829
osa-u.5
for
4338177
zma-u.5
for
103649996
zma-u.5
for
103635708
zma-u.5
for
542336
bra-r.6
for
103851094
bra-r.6
for
103868732
vvi-u.5
for
100250590
ppo-u.5
for
7460975
ppo-u.5
for
18096203
mtr-u.5
for
25489689
tae-r.2
for
123078098
tae-r.2
for
123060815
tae-r.2
for
123180860
hvu-r.1
for
123443271
ghi-r.1
for
107951959
ghi-r.1
for
121229515
ghi-r.1
for
121210909
bna-r.1
for
106354423
bna-r.1
for
111213687
sbi-r.1
for
8054654
sbi-r.1
for
8078082
sot-r.1
for
102582879
cit-r.1
for
102617267
cit-r.1
for
102616765
bdi-r.1
for
100822112
bdi-r.1
for
100845679
bdi-r.1
for
100844452
nta-r.1
for
107783616
nta-r.1
for
107794571


Ortholog ID: 3398
Species cre ath gma gma gma sly osa osa zma zma zma bra bra vvi ppo ppo mtr tae tae tae hvu ghi ghi ghi bna bna sbi sbi sot cit cit bdi bdi bdi nta nta
Symbol CHLRE_03g207900v5 CYCA1;1 LOC100776207 LOC100789565 LOC100798216 CycA1 LOC9268829 LOC4338177 LOC103649996 LOC103635708 LOC542336 LOC103851094 LOC103868732 LOC100250590 LOC7460975 LOC18096203 LOC25489689 LOC123180860 LOC123112975 LOC123077889 LOC123443271 LOC107951959 LOC121210909 LOC107940547 LOC111213687 LOC106397629 LOC8054654 LOC8078082 LOC102582879 LOC102617267 LOC102616765 LOC100822112 LOC100845679 LOC100844452 LOC107783616 LOC107794571
Function* uncharacterized protein Cyclin A1;1 cyclin-A1-1-like cyclin-A1-1 cyclin-A1-4 cyclin A1 cyclin-A1-3-like cyclin-A1-4-like cyclin-A1-1-like cyclin-A1-4 cyclin 2 cyclin-A1-1 cyclin-A1-1 cyclin-A1-1 cyclin-A1-1 cyclin-A1-1 cyclin-A1-1 cyclin-A1-4 cyclin-A1-4 cyclin-A1-2 cyclin-A1-2-like cyclin-A1-1 cyclin-A1-1 cyclin-A1-1 cyclin-A1-1-like cyclin-A1-1-like cyclin-A1-1 cyclin-A1-3 cyclin-A1-4 cyclin-A1-1 cyclin-A1-4-like cyclin-A1-4-like cyclin-A1-1-like cyclin-A1-1-like cyclin-A1-4-like cyclin-A1-4-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00270 Cysteine and methionine metabolism 2
sbi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04814 Motor proteins 2
sot00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00330 Arginine and proline metabolism 2
cit00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 3
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5718813 841014 100776207 100789565 100798216 543744 9268829 4338177 103649996 103635708 542336 103851094 103868732 100250590 7460975 18096203 25489689 123180860 123112975 123077889 123443271 107951959 121210909 107940547 111213687 106397629 8054654 8078082 102582879 102617267 102616765 100822112 100845679 100844452 107783616 107794571
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