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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g207050v5   ribosomal protein L29 
 ath-u.5   AT3G06680   Ribosomal L29e protein family 
 ath-u.5   AT3G06700   Ribosomal L29e protein family 
 gma-u.5   100777189   60S ribosomal protein L29-1 
 gma-u.5   100499874   60S ribosomal protein L29-1 
 gma-u.5   100803210   60S ribosomal protein L29-1 
 sly-u.5   101263912   large ribosomal subunit protein eL29y-like 
 sly-u.5   DDTFR19   ripening regulated protein DDTFR19 
 osa-u.5   4338517   large ribosomal subunit protein eL29z 
 osa-u.5   4323904   large ribosomal subunit protein eL29z 
 zma-u.5   100281939   60S ribosomal protein L29-like 
 zma-u.5   100281996   60S ribosomal protein L29-like 
 zma-u.5   100285060   60S ribosomal protein L29-like 
 bra-r.6   103849728   60S ribosomal protein L29-1 
 bra-r.6   103859176   60S ribosomal protein L29-2 
 bra-r.6   103870725   60S ribosomal protein L29-1 
 ppo-u.5   7471116   60S ribosomal protein L29-1 
 ppo-u.5   7482267   60S ribosomal protein L29-1 
 ppo-u.5   7481396   60S ribosomal protein L29-1 
 mtr-u.5   25494114   60S ribosomal protein L29-1 
 mtr-u.5   11427897   60S ribosomal protein L29-1 
 tae-r.2   123181738   60S ribosomal protein L29-1 
 tae-r.2   123129241   60S ribosomal protein L29-1 
 tae-r.2   123052873   60S ribosomal protein L29-1 
 hvu-r.1   123440896   60S ribosomal protein L29-1-like 
 ghi-r.1   107926378   60S ribosomal protein L29-1 
 ghi-r.1   107938650   60S ribosomal protein L29-2 
 ghi-r.1   121206410   60S ribosomal protein L29-1 
 bna-r.1   106400541   60S ribosomal protein L29-1 
 bna-r.1   125602529   60S ribosomal protein L29-1 
 sbi-r.1   8061891   60S ribosomal protein L29-1 
 sbi-r.1   8083759   60S ribosomal protein L29-2 
 sot-r.1   102581332   60S ribosomal protein L29-2-like 
 sot-r.1   102582754   60S ribosomal protein L29-2 
 cit-r.1   102626567   60S ribosomal protein L29-1 
 cit-r.1   102624936   60S ribosomal protein L29-1 
 bdi-r.1   100838587   60S ribosomal protein L29-1 
 bdi-r.1   100846456   60S ribosomal protein L29-1 

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Top 50 coexpressed genes to CHLRE_03g207050v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g207050v5 (cre-r.1 coexpression data)

CoexMap"5718833"


creCHLRE_03g207050v5 | Entrez gene ID : 5718833      
Species cre ath gma sly osa zma bra ppo mtr tae hvu ghi bna sbi sot cit bdi vvi nta
Paralog 1 2 3 2 2 3 3 3 2 3 1 3 2 2 2 2 2 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03010 [list] [network] Ribosome (149 genes)
GO BP
GO:0002181 [list] [network] cytoplasmic translation  (35 genes)  IEA  
GO CC
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (43 genes)  IEA  
GO:0005840 [list] [network] ribosome  (168 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (164 genes)  IEA  
Protein XP_001693175.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  plas 1,  cyto 1,  mito 1,  extr 1,  golg_plas 1,  cysk_plas 1,  E.R._plas 1  (predict for XP_001693175.1)
Subcellular
localization
TargetP
other 5,  chlo 4  (predict for XP_001693175.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g207050v5
ath-u.5
for
AT3G06680
ath-u.5
for
AT3G06700
gma-u.5
for
100777189
gma-u.5
for
100499874
gma-u.5
for
100803210
sly-u.5
for
101263912
sly-u.5
for
DDTFR19
osa-u.5
for
4338517
osa-u.5
for
4323904
zma-u.5
for
100281939
zma-u.5
for
100281996
zma-u.5
for
100285060
bra-r.6
for
103849728
bra-r.6
for
103859176
bra-r.6
for
103870725
ppo-u.5
for
7471116
ppo-u.5
for
7482267
ppo-u.5
for
7481396
mtr-u.5
for
25494114
mtr-u.5
for
11427897
tae-r.2
for
123181738
tae-r.2
for
123129241
tae-r.2
for
123052873
hvu-r.1
for
123440896
ghi-r.1
for
107926378
ghi-r.1
for
107938650
ghi-r.1
for
121206410
bna-r.1
for
106400541
bna-r.1
for
125602529
sbi-r.1
for
8061891
sbi-r.1
for
8083759
sot-r.1
for
102581332
sot-r.1
for
102582754
cit-r.1
for
102626567
cit-r.1
for
102624936
bdi-r.1
for
100838587
bdi-r.1
for
100846456


Ortholog ID: 3680
Species cre ath ath gma gma gma sly sly osa osa zma zma zma bra bra bra ppo ppo ppo mtr mtr tae tae tae hvu ghi ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi
Symbol CHLRE_03g207050v5 AT3G06680 AT3G06700 LOC100499874 LOC100803210 LOC100810108 LOC101263912 DDTFR19 LOC4338517 LOC4323904 LOC100281939 LOC100281996 LOC100285060 LOC103849728 LOC103859176 LOC103870725 LOC7471116 LOC7482267 LOC7481396 LOC25494114 LOC11427897 LOC123181738 LOC123129241 LOC123052873 LOC123440896 LOC107938650 LOC121222450 LOC107896617 LOC106400541 LOC106346115 LOC8061891 LOC8083759 LOC102581332 LOC102582754 LOC102626567 LOC102624936 LOC100838587 LOC100846456
Function* ribosomal protein L29 Ribosomal L29e protein family Ribosomal L29e protein family 60S ribosomal protein L29-1 60S ribosomal protein L29-1 60S ribosomal protein L29-1 large ribosomal subunit protein eL29y-like ripening regulated protein DDTFR19 large ribosomal subunit protein eL29z large ribosomal subunit protein eL29z 60S ribosomal protein L29-like 60S ribosomal protein L29-like 60S ribosomal protein L29-like 60S ribosomal protein L29-1 60S ribosomal protein L29-2 60S ribosomal protein L29-1 60S ribosomal protein L29-1 60S ribosomal protein L29-1 60S ribosomal protein L29-1 60S ribosomal protein L29-1 60S ribosomal protein L29-1 60S ribosomal protein L29-1 60S ribosomal protein L29-1 60S ribosomal protein L29-1 60S ribosomal protein L29-1-like 60S ribosomal protein L29-2 60S ribosomal protein L29-1 60S ribosomal protein L29-1 60S ribosomal protein L29-1 60S ribosomal protein L29-1 60S ribosomal protein L29-1 60S ribosomal protein L29-2 60S ribosomal protein L29-2-like 60S ribosomal protein L29-2 60S ribosomal protein L29-1 60S ribosomal protein L29-1 60S ribosomal protein L29-1 60S ribosomal protein L29-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 11
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 17
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 9
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 14
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 13
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5718833 819853 819855 100499874 100803210 100810108 101263912 544172 4338517 4323904 100281939 100281996 100285060 103849728 103859176 103870725 7471116 7482267 7481396 25494114 11427897 123181738 123129241 123052873 123440896 107938650 121222450 107896617 106400541 106346115 8061891 8083759 102581332 102582754 102626567 102624936 100838587 100846456
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