ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_13g562850v5	uncharacterized protein
ath-u.5	PSB29	photosystem II reaction center PSB29 protein
gma-u.5	100814341	protein THYLAKOID FORMATION1, chloroplastic
gma-u.5	100796767	protein THYLAKOID FORMATION1, chloroplastic
gma-u.5	100792508	protein THYLAKOID FORMATION1, chloroplastic
sly-u.5	101253003	protein THYLAKOID FORMATION1, chloroplastic
osa-u.5	4343584	protein THYLAKOID FORMATION1, chloroplastic-like
zma-u.5	100193314	chloroplast-localized Ptr ToxA-binding protein 1
zma-u.5	100382672	Protein THYLAKOID FORMATION 1 chloroplastic
bra-r.6	103842574	protein THYLAKOID FORMATION 1, chloroplastic
vvi-u.5	100259646	protein THYLAKOID FORMATION1, chloroplastic
ppo-u.5	7494227	protein THYLAKOID FORMATION1, chloroplastic
ppo-u.5	7494440	protein THYLAKOID FORMATION1, chloroplastic
mtr-u.5	25492064	protein THYLAKOID FORMATION1, chloroplastic
mtr-u.5	25487573	protein THYLAKOID FORMATION1, chloroplastic
tae-r.2	123188272	protein THYLAKOID FORMATION1, chloroplastic
tae-r.2	123044553	protein THYLAKOID FORMATION1, chloroplastic
tae-r.2	543119	protein THYLAKOID FORMATION1, chloroplastic
hvu-r.1	123425712	protein THYLAKOID FORMATION1, chloroplastic
ghi-r.1	107948994	protein THYLAKOID FORMATION1, chloroplastic
ghi-r.1	107898931	protein THYLAKOID FORMATION1, chloroplastic
bna-r.1	106368798	protein THYLAKOID FORMATION 1, chloroplastic
bna-r.1	106415074	protein THYLAKOID FORMATION 1, chloroplastic
sbi-r.1	8056327	protein THYLAKOID FORMATION1, chloroplastic
sot-r.1	THF1	light-regulated chloroplast-localized protein
cit-r.1	102609819	protein THYLAKOID FORMATION1, chloroplastic
bdi-r.1	100839581	protein THYLAKOID FORMATION1, chloroplastic
nta-r.1	107776485	protein THYLAKOID FORMATION1, chloroplastic
nta-r.1	107808613	protein THYLAKOID FORMATION1, chloroplastic-like

Top 50 coexpressed genes to CHLRE_13g562850v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_13g562850v5 (cre-r.1 coexpression data)

CoexMap"5718977"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0045038 [list] [network] protein import into chloroplast thylakoid membrane	(1 genes)	IEA
GO:0045037 [list] [network] protein import into chloroplast stroma	(4 genes)	IEA
GO:0010207 [list] [network] photosystem II assembly	(5 genes)	IEA
GO:0010027 [list] [network] thylakoid membrane organization	(10 genes)	IEA
GO:0015979 [list] [network] photosynthesis	(64 genes)	IEA

GO CC

GO:0009534 [list] [network] chloroplast thylakoid

(62 genes)

IEA

GO MF

Protein

XP_001693657.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9

(predict for XP_001693657.1)

Subcellular
localization
TargetP

chlo 5

(predict for XP_001693657.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_13g562850v5	ath-u.5 for PSB29	gma-u.5 for 100814341	gma-u.5 for 100796767	gma-u.5 for 100792508	sly-u.5 for 101253003	osa-u.5 for 4343584	zma-u.5 for 100193314	zma-u.5 for 100382672	bra-r.6 for 103842574	vvi-u.5 for 100259646	ppo-u.5 for 7494227	ppo-u.5 for 7494440	mtr-u.5 for 25492064	mtr-u.5 for 25487573	tae-r.2 for 123188272	tae-r.2 for 123044553	tae-r.2 for 543119	hvu-r.1 for 123425712	ghi-r.1 for 107948994	ghi-r.1 for 107898931	bna-r.1 for 106368798	bna-r.1 for 106415074	sbi-r.1 for 8056327	sot-r.1 for THF1	cit-r.1 for 102609819	bdi-r.1 for 100839581	nta-r.1 for 107776485	nta-r.1 for 107808613

Ortholog

Ortholog ID: 7510

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

PSB29

THF1

Function^*

uncharacterized protein

photosystem II reaction center PSB29 protein

protein THYLAKOID FORMATION1, chloroplastic

protein THYLAKOID FORMATION1, chloroplastic-like

chloroplast-localized Ptr ToxA-binding protein 1

Protein THYLAKOID FORMATION 1 chloroplastic

protein THYLAKOID FORMATION 1, chloroplastic

protein THYLAKOID FORMATION1, chloroplastic

protein THYLAKOID FORMATION 1, chloroplastic

protein THYLAKOID FORMATION1, chloroplastic

light-regulated chloroplast-localized protein

protein THYLAKOID FORMATION1, chloroplastic

protein THYLAKOID FORMATION1, chloroplastic-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00710	Carbon fixation by Calvin cycle	11
gma01200	Carbon metabolism	11
gma00010	Glycolysis / Gluconeogenesis	5
gma00030	Pentose phosphate pathway	5
gma00051	Fructose and mannose metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00710	Carbon fixation by Calvin cycle	3
gma01200	Carbon metabolism	3
gma03010	Ribosome	2
gma00010	Glycolysis / Gluconeogenesis	2
gma00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	15
gma00860	Porphyrin metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	9
sly00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00860	Porphyrin metabolism	5
zma01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00860	Porphyrin metabolism	4
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	4
vvi00195	Photosynthesis	3
vvi00710	Carbon fixation by Calvin cycle	3
vvi00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00195	Photosynthesis	6
ppo00710	Carbon fixation by Calvin cycle	3
ppo01200	Carbon metabolism	3
ppo00010	Glycolysis / Gluconeogenesis	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ppo00350	Tyrosine metabolism	2
ppo00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	2
mtr00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	4
tae00053	Ascorbate and aldarate metabolism	3
tae00480	Glutathione metabolism	3
tae03010	Ribosome	3
tae00860	Porphyrin metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	5
tae00053	Ascorbate and aldarate metabolism	3
tae00480	Glutathione metabolism	3
tae03010	Ribosome	3
tae00860	Porphyrin metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	4
tae00053	Ascorbate and aldarate metabolism	3
tae00480	Glutathione metabolism	3
tae00860	Porphyrin metabolism	3
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	4
ghi03010	Ribosome	3
ghi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	4
ghi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03060	Protein export	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00860	Porphyrin metabolism	6
sbi01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	4
sot00710	Carbon fixation by Calvin cycle	3
sot01200	Carbon metabolism	3
sot01230	Biosynthesis of amino acids	3
sot00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00195	Photosynthesis	2
cit00350	Tyrosine metabolism	2
cit00010	Glycolysis / Gluconeogenesis	2
cit00071	Fatty acid degradation	2
cit00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00710	Carbon fixation by Calvin cycle	2
bdi01200	Carbon metabolism	2
bdi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	11
nta00750	Vitamin B6 metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	8
nta00860	Porphyrin metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

5718977

816623

100814341

100796767

100779964

101253003

4343584

100193314

100382672

103842574

100259646

7494227

7494440

25492064

25487573

123188272

123044553

543119

123425712

107948994

107898931

106368798

106415074

8056327

102577610

102609819

100839581

107776485

107808613

The preparation time of this page was 0.1 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	3	1	1	2	1	1	2	2	3	1	2	2	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_13g562850v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_13g562850v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**