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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1  CHLRE_13g576350v5  uncharacterized protein 
 ath-u.5  AT1G03760  Prefoldin chaperone subunit family protein 
 gma-u.5  100781544  RNA polymerase II subunit 5-mediating protein homolog 
 gma-u.5  100814493  RNA polymerase II subunit 5-mediating protein homolog 
 sly-u.5  101247038  uncharacterized LOC101247038 
 osa-u.5  9272710  uncharacterized LOC9272710 
 zma-u.5  103650814  unconventional prefoldin RPB5 interactor 
 zma-u.5  100383656  Prefoldin chaperone subunit family protein 
 bra-r.6  103844320  RNA polymerase II subunit 5-mediating protein homolog 
 vvi-u.5  100254110  uncharacterized LOC100254110 
 ppo-u.5  18106774  uncharacterized LOC18106774 
 mtr-u.5  25492905  RNA polymerase II subunit 5-mediating protein homolog 
 tae-r.2  123063206  RNA polymerase II subunit 5-mediating protein homolog 
 tae-r.2  123072110  RNA polymerase II subunit 5-mediating protein homolog 
 tae-r.2  123080392  RNA polymerase II subunit 5-mediating protein homolog 
 hvu-r.1  123445318  RNA polymerase II subunit 5-mediating protein homolog 
 ghi-r.1  107933032  RNA polymerase II subunit 5-mediating protein homolog 
 ghi-r.1  107960115  RNA polymerase II subunit 5-mediating protein homolog 
 ghi-r.1  107933063  uncharacterized LOC107933063 
 bna-r.1  106422931  RNA polymerase II subunit 5-mediating protein homolog 
 bna-r.1  106401058  RNA polymerase II subunit 5-mediating protein homolog 
 sbi-r.1  110433849  nuclear polyadenylated RNA-binding protein 3-like 
 sot-r.1  102603386  RNA polymerase II subunit 5-mediating protein homolog 
 cit-r.1  102625230  uncharacterized LOC102625230 
 cit-r.1  102629247  uncharacterized LOC102629247 
 bdi-r.1  100828079  RNA polymerase II subunit 5-mediating protein homolog 
 nta-r.1  107810662  uncharacterized LOC107810662 
 nta-r.1  107808448  uncharacterized LOC107808448 

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Top 50 coexpressed genes to CHLRE_13g576350v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_13g576350v5 (cre-r.1 coexpression data)

CoexMap"5719240"


creCHLRE_13g576350v5 | Entrez gene ID : 5719240
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 2 1 1 1 1 3 1 3 2 1 1 2 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010923 [list] [network] negative regulation of phosphatase activity  (1 genes)  IEA  
GO:0000122 [list] [network] negative regulation of transcription by RNA polymerase II  (12 genes)  IEA  
GO CC
GO MF
GO:0019212 [list] [network] phosphatase inhibitor activity  (3 genes)  IEA  
GO:0003714 [list] [network] transcription corepressor activity  (10 genes)  IEA  
GO:0003682 [list] [network] chromatin binding  (81 genes)  IEA  
Protein XP_042917438.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 3  (predict for XP_042917438.1)
Subcellular
localization
TargetP
other 5  (predict for XP_042917438.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

cre-r.1
for
CHLRE_13g576350v5


ath-u.5
for
AT1G03760


gma-u.5
for
100781544


gma-u.5
for
100814493


sly-u.5
for
101247038


osa-u.5
for
9272710


zma-u.5
for
103650814


zma-u.5
for
100383656


bra-r.6
for
103844320


vvi-u.5
for
100254110


ppo-u.5
for
18106774


mtr-u.5
for
25492905


tae-r.2
for
123063206


tae-r.2
for
123072110


tae-r.2
for
123080392


hvu-r.1
for
123445318


ghi-r.1
for
107933032


ghi-r.1
for
107960115


ghi-r.1
for
107933063


bna-r.1
for
106422931


bna-r.1
for
106401058


sbi-r.1
for
110433849


sot-r.1
for
102603386


cit-r.1
for
102625230


cit-r.1
for
102629247


bdi-r.1
for
100828079


nta-r.1
for
107810662


nta-r.1
for
107808448



Ortholog ID: 8256
Species cre ath gma gma sly osa zma zma bra vvi ppo mtr tae tae tae hvu ghi ghi ghi bna bna sbi sot cit cit bdi nta nta
Symbol CHLRE_13g576350v5 AT1G03760 LOC100781544 LOC100814493 LOC101247038 LOC9272710 LOC103650814 LOC100383656 LOC103844320 LOC100254110 LOC18106774 LOC25492905 LOC123063206 LOC123072110 LOC123080392 LOC123445318 LOC107933032 LOC107960115 LOC107933063 LOC106422931 LOC106401058 LOC110433849 LOC102603386 LOC102625230 LOC102629247 LOC100828079 LOC107810662 LOC107808448
Function* uncharacterized protein Prefoldin chaperone subunit family protein RNA polymerase II subunit 5-mediating protein homolog RNA polymerase II subunit 5-mediating protein homolog uncharacterized LOC101247038 uncharacterized LOC9272710 unconventional prefoldin RPB5 interactor Prefoldin chaperone subunit family protein RNA polymerase II subunit 5-mediating protein homolog uncharacterized LOC100254110 uncharacterized LOC18106774 RNA polymerase II subunit 5-mediating protein homolog RNA polymerase II subunit 5-mediating protein homolog RNA polymerase II subunit 5-mediating protein homolog RNA polymerase II subunit 5-mediating protein homolog RNA polymerase II subunit 5-mediating protein homolog RNA polymerase II subunit 5-mediating protein homolog RNA polymerase II subunit 5-mediating protein homolog uncharacterized LOC107933063 RNA polymerase II subunit 5-mediating protein homolog RNA polymerase II subunit 5-mediating protein homolog nuclear polyadenylated RNA-binding protein 3-like RNA polymerase II subunit 5-mediating protein homolog uncharacterized LOC102625230 uncharacterized LOC102629247 RNA polymerase II subunit 5-mediating protein homolog uncharacterized LOC107810662 uncharacterized LOC107808448
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 2
gma00030 Pentose phosphate pathway 2
gma00051 Fructose and mannose metabolism 2
gma00052 Galactose metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna00010 Glycolysis / Gluconeogenesis 2
bna00040 Pentose and glucuronate interconversions 2
bna00053 Ascorbate and aldarate metabolism 2
bna00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5719240 839119 100781544 100814493 101247038 9272710 103650814 100383656 103844320 100254110 18106774 25492905 123063206 123072110 123080392 123445318 107933032 107960115 107933063 106422931 106401058 110433849 102603386 102625230 102629247 100828079 107810662 107808448
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