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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g555200v5   uncharacterized protein 
 ath-u.5   AT1G07970   cytochrome B561, amino-terminal protein 
 gma-u.5   100816099   transmembrane protein 209 
 sly-u.5   101252556   uncharacterized LOC101252556 
 osa-u.5   4332493   uncharacterized LOC4332493 
 zma-u.5   100279033   uncharacterized LOC100279033 
 bra-r.6   103871537   uncharacterized LOC103871537 
 vvi-u.5   100256992   uncharacterized LOC100256992 
 ppo-u.5   7489333   uncharacterized LOC7489333 
 mtr-u.5   11411071   transmembrane protein 209 
 tae-r.2   123097794   transmembrane protein 209 
 tae-r.2   123092478   transmembrane protein 209 
 tae-r.2   123085561   transmembrane protein 209 
 hvu-r.1   123448927   transmembrane protein 209 
 ghi-r.1   107942712   transmembrane protein 209 
 ghi-r.1   107889159   transmembrane protein 209 
 bna-r.1   106415740   uncharacterized LOC106415740 
 bna-r.1   106346372   uncharacterized LOC106346372 
 sbi-r.1   8081438   transmembrane protein 209 
 sot-r.1   102601434   transmembrane protein 209 
 cit-r.1   102614382   uncharacterized LOC102614382 
 bdi-r.1   100833429   transmembrane protein 209 
 nta-r.1   107785068   uncharacterized LOC107785068 
 nta-r.1   107796269   uncharacterized LOC107796269 

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Top 50 coexpressed genes to CHLRE_12g555200v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g555200v5 (cre-r.1 coexpression data)

CoexMap"5719731"


creCHLRE_12g555200v5 | Entrez gene ID : 5719731      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 1 1 1 1 1 1 1 1 3 1 2 2 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0016020 [list] [network] membrane  (1543 genes)  IEA  
GO MF
Protein XP_042918922.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_042918922.1)
Subcellular
localization
TargetP
other 4  (predict for XP_042918922.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g555200v5
ath-u.5
for
AT1G07970
gma-u.5
for
100816099
sly-u.5
for
101252556
osa-u.5
for
4332493
zma-u.5
for
100279033
bra-r.6
for
103871537
vvi-u.5
for
100256992
ppo-u.5
for
7489333
mtr-u.5
for
11411071
tae-r.2
for
123097794
tae-r.2
for
123092478
tae-r.2
for
123085561
hvu-r.1
for
123448927
ghi-r.1
for
107942712
ghi-r.1
for
107889159
bna-r.1
for
106415740
bna-r.1
for
106346372
sbi-r.1
for
8081438
sot-r.1
for
102601434
cit-r.1
for
102614382
bdi-r.1
for
100833429
nta-r.1
for
107785068
nta-r.1
for
107796269


Ortholog ID: 11032
Species cre ath gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_12g555200v5 AT1G07970 LOC100816099 LOC101252556 LOC4332493 LOC100279033 LOC103871537 LOC100256992 LOC7489333 LOC11411071 LOC123097794 LOC123092478 LOC123085561 LOC123448927 LOC107942712 LOC107889159 LOC106415740 LOC106346372 LOC8081438 LOC102601434 LOC102614382 LOC100833429 LOC107785068 LOC107796269
Function* uncharacterized protein cytochrome B561, amino-terminal protein transmembrane protein 209 uncharacterized LOC101252556 uncharacterized LOC4332493 uncharacterized LOC100279033 uncharacterized LOC103871537 uncharacterized LOC100256992 uncharacterized LOC7489333 transmembrane protein 209 transmembrane protein 209 transmembrane protein 209 transmembrane protein 209 transmembrane protein 209 transmembrane protein 209 transmembrane protein 209 uncharacterized LOC106415740 uncharacterized LOC106346372 transmembrane protein 209 transmembrane protein 209 uncharacterized LOC102614382 transmembrane protein 209 uncharacterized LOC107785068 uncharacterized LOC107796269
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 4
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
gma04626 Plant-pathogen interaction 2
gma03020 RNA polymerase 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 7
sly03040 Spliceosome 3
sly03020 RNA polymerase 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 3
osa03082 ATP-dependent chromatin remodeling 2
osa03010 Ribosome 2
osa00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 2
zma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03040 Spliceosome 2
vvi00020 Citrate cycle (TCA cycle) 2
vvi00785 Lipoic acid metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03015 mRNA surveillance pathway 4
ppo03018 RNA degradation 4
ppo01210 2-Oxocarboxylic acid metabolism 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03410 Base excision repair 2
hvu03420 Nucleotide excision repair 2
hvu03018 RNA degradation 2
hvu03030 DNA replication 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00310 Lysine degradation 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00310 Lysine degradation 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 8
bna03015 mRNA surveillance pathway 6
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 8
bna03015 mRNA surveillance pathway 6
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03015 mRNA surveillance pathway 3
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta01230 Biosynthesis of amino acids 3
nta00240 Pyrimidine metabolism 2
nta01240 Biosynthesis of cofactors 2
nta00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta01230 Biosynthesis of amino acids 3
nta00240 Pyrimidine metabolism 2
nta01240 Biosynthesis of cofactors 2
nta00220 Arginine biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5719731 837312 100816099 101252556 4332493 100279033 103871537 100256992 7489333 11411071 123097794 123092478 123085561 123448927 107942712 107889159 106415740 106346372 8081438 102601434 102614382 100833429 107785068 107796269
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