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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g555951v5   uncharacterized protein 
 ath-u.5   PyrD   Cytidine/deoxycytidylate deaminase family protein 
 gma-u.5   100789675   riboflavin biosynthesis protein PYRD, chloroplastic 
 gma-u.5   100786393   riboflavin biosynthesis protein PYRD, chloroplastic 
 sly-u.5   101263546   riboflavin biosynthesis protein PYRD, chloroplastic 
 osa-u.5   9272088   riboflavin biosynthesis protein PYRD, chloroplastic 
 osa-u.5   4331409   riboflavin biosynthesis protein PYRD, chloroplastic 
 zma-u.5   100191772   riboflavin biosynthesis protein ribD 
 bra-r.6   103834212   riboflavin biosynthesis protein PYRD, chloroplastic 
 vvi-u.5   100246468   riboflavin biosynthesis protein PYRD, chloroplastic 
 ppo-u.5   7461764   riboflavin biosynthesis protein PYRD, chloroplastic 
 mtr-u.5   11422868   riboflavin biosynthesis protein PYRD, chloroplastic 
 tae-r.2   123105998   riboflavin biosynthesis protein PYRD, chloroplastic 
 tae-r.2   123099050   riboflavin biosynthesis protein PYRD, chloroplastic 
 tae-r.2   123093822   riboflavin biosynthesis protein PYRD, chloroplastic 
 hvu-r.1   123449913   riboflavin biosynthesis protein PYRD, chloroplastic 
 ghi-r.1   107922026   riboflavin biosynthesis protein PYRD, chloroplastic 
 ghi-r.1   107930493   riboflavin biosynthesis protein PYRD, chloroplastic 
 bna-r.1   106360994   riboflavin biosynthesis protein PYRD, chloroplastic 
 bna-r.1   125577358   riboflavin biosynthesis protein PYRD, chloroplastic-like 
 bna-r.1   125594719   riboflavin biosynthesis protein PYRD, chloroplastic-like 
 sbi-r.1   8077992   riboflavin biosynthesis protein PYRD, chloroplastic 
 sot-r.1   102589820   riboflavin biosynthesis protein PYRD, chloroplastic 
 cit-r.1   102620969   riboflavin biosynthesis protein PYRD, chloroplastic 
 cit-r.1   102608103   riboflavin biosynthesis protein PYRD, chloroplastic-like 
 cit-r.1   127901238   riboflavin biosynthesis protein PYRD, chloroplastic-like 
 bdi-r.1   100846374   riboflavin biosynthesis protein PYRD, chloroplastic 
 nta-r.1   107827881   riboflavin biosynthesis protein PYRD, chloroplastic 
 nta-r.1   107809803   riboflavin biosynthesis protein PYRD, chloroplastic-like 

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Top 50 coexpressed genes to CHLRE_12g555951v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g555951v5 (cre-r.1 coexpression data)

CoexMap"5719743"


creCHLRE_12g555951v5 | Entrez gene ID : 5719743    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 2 1 1 1 1 1 3 1 2 3 1 1 3 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0008835 [list] [network] diaminohydroxyphosphoribosylaminopyrimidine deaminase activity  (1 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (213 genes)  IEA  
Protein XP_001694045.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 4  (predict for XP_001694045.2)
Subcellular
localization
TargetP
other 7  (predict for XP_001694045.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g555951v5
ath-u.5
for
PyrD
gma-u.5
for
100789675
gma-u.5
for
100786393
sly-u.5
for
101263546
osa-u.5
for
9272088
osa-u.5
for
4331409
zma-u.5
for
100191772
bra-r.6
for
103834212
vvi-u.5
for
100246468
ppo-u.5
for
7461764
mtr-u.5
for
11422868
tae-r.2
for
123105998
tae-r.2
for
123099050
tae-r.2
for
123093822
hvu-r.1
for
123449913
ghi-r.1
for
107922026
ghi-r.1
for
107930493
bna-r.1
for
106360994
bna-r.1
for
125577358
bna-r.1
for
125594719
sbi-r.1
for
8077992
sot-r.1
for
102589820
cit-r.1
for
102620969
cit-r.1
for
102608103
cit-r.1
for
127901238
bdi-r.1
for
100846374
nta-r.1
for
107827881
nta-r.1
for
107809803


Ortholog ID: 7286
Species cre ath gma gma sly osa osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna bna sbi sot cit cit cit bdi nta nta
Symbol CHLRE_12g555951v5 PyrD LOC100789675 LOC100786393 LOC101263546 LOC9272088 LOC4331409 LOC100191772 LOC103834212 LOC100246468 LOC7461764 LOC11422868 LOC123099050 LOC123093822 LOC123108276 LOC123449913 LOC107922026 LOC107930493 LOC106360994 LOC125577358 LOC125594719 LOC8077992 LOC102589820 LOC102620969 LOC102608103 LOC127901238 LOC100846374 LOC107827881 LOC107809803
Function* uncharacterized protein Cytidine/deoxycytidylate deaminase family protein riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein ribD riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic-like riboflavin biosynthesis protein PYRD, chloroplastic-like riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic-like riboflavin biosynthesis protein PYRD, chloroplastic-like riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00740 Riboflavin metabolism 4
gma04142 Lysosome 3
gma04626 Plant-pathogen interaction 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 6
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi04141 Protein processing in endoplasmic reticulum 2
vvi03018 RNA degradation 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 3
ppo01240 Biosynthesis of cofactors 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00740 Riboflavin metabolism 4
mtr01240 Biosynthesis of cofactors 4
mtr04142 Lysosome 2
mtr00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 4
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
tae00740 Riboflavin metabolism 2
tae00750 Vitamin B6 metabolism 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 5
tae00740 Riboflavin metabolism 3
tae00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00740 Riboflavin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00740 Riboflavin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00740 Riboflavin metabolism 3
bna01240 Biosynthesis of cofactors 3
bna03008 Ribosome biogenesis in eukaryotes 2
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00740 Riboflavin metabolism 3
bna01240 Biosynthesis of cofactors 3
bna03008 Ribosome biogenesis in eukaryotes 2
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00740 Riboflavin metabolism 3
bna01240 Biosynthesis of cofactors 3
bna03008 Ribosome biogenesis in eukaryotes 2
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 5
sbi00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 10
cit00620 Pyruvate metabolism 8
cit01240 Biosynthesis of cofactors 7
cit00010 Glycolysis / Gluconeogenesis 6
cit00020 Citrate cycle (TCA cycle) 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 5
cit01240 Biosynthesis of cofactors 5
cit00010 Glycolysis / Gluconeogenesis 4
cit00020 Citrate cycle (TCA cycle) 4
cit00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 10
cit00620 Pyruvate metabolism 8
cit01240 Biosynthesis of cofactors 7
cit00010 Glycolysis / Gluconeogenesis 6
cit00020 Citrate cycle (TCA cycle) 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 5
bdi00500 Starch and sucrose metabolism 2
bdi01240 Biosynthesis of cofactors 2
bdi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 5
nta00740 Riboflavin metabolism 4
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta00650 Butanoate metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00740 Riboflavin metabolism 4
nta01240 Biosynthesis of cofactors 4
nta00450 Selenocompound metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5719743 827843 100789675 100786393 101263546 9272088 4331409 100191772 103834212 100246468 7461764 11422868 123099050 123093822 123108276 123449913 107922026 107930493 106360994 125577358 125594719 8077992 102589820 102620969 102608103 127901238 100846374 107827881 107809803
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