ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_06g289750v5	uncharacterized protein
cre-r.1	CHLRE_11g467772v5	uncharacterized protein
cre-r.1	CHLRE_06g284350v5	uncharacterized protein
cre-r.1	CHLRE_09g414416v5	uncharacterized protein
ath-u.5	CYCD2;1	Cyclin D2;1
ath-u.5	CYCD1;1	CYCLIN D1;1
ath-u.5	CYCD3;2	CYCLIN D3;2
gma-u.5	100802683	cyclin-D3-2
gma-u.5	100811122	cyclin-D3-1
gma-u.5	100812660	cyclin-D4-1
sly-u.5	cycd3c2	D-type cyclin-2
sly-u.5	cycd3c3	D-type cyclin-3
osa-u.5	9272445	cyclin-D1-2
osa-u.5	4331985	cyclin-D5-3-like
zma-u.5	100283538	cyclin delta-2
zma-u.5	100285876	cyclin delta-2
bra-r.6	103846805	cyclin-D4-2
vvi-u.5	100854424	cyclin-D5-1
vvi-u.5	104878152	uncharacterized LOC104878152
ppo-u.5	7478749	cyclin-D4-1
ppo-u.5	7462617	cyclin-D1-1
mtr-u.5	11433995	cyclin-D5-1
mtr-u.5	11431822	cyclin-D3-1
mtr-u.5	11420885	cyclin-D4-2
tae-r.2	123044173	cyclin-D2-2
tae-r.2	123052052	cyclin-D2-2
hvu-r.1	123425263	cyclin-D2-2-like
hvu-r.1	123452775	cyclin-D5-2-like
hvu-r.1	123402224	cyclin-D3-1-like
ghi-r.1	107911621	cyclin-D4-2
ghi-r.1	107913282	cyclin-D5-1
ghi-r.1	107913300	cyclin-D1-1
bna-r.1	106409485	cyclin-D3-3
bna-r.1	106410589	cyclin-D5-1
bna-r.1	106411811	cyclin-D2-1-like
sbi-r.1	8063725	cyclin-D4-1
sbi-r.1	8061553	cyclin-D2-2
sot-r.1	102600091	cyclin-D4-1-like
sot-r.1	102605668	cyclin-D1-1
cit-r.1	102622171	cyclin-D1-1
cit-r.1	102630732	cyclin-D4-1-like
cit-r.1	102628473	cyclin-D3-2
bdi-r.1	100821457	cyclin-D5-2
bdi-r.1	100841255	cyclin-D4-2
bdi-r.1	100836992	cyclin-D2-1
nta-r.1	107811128	cyclin-D4-1
nta-r.1	107782437	cyclin-D4-1-like
nta-r.1	107782163	cyclin-D3-2

Top 50 coexpressed genes to CHLRE_06g289750v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_06g289750v5 (cre-r.1 coexpression data)

CoexMap"5721073"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity	(12 genes)	IEA
GO:0044772 [list] [network] mitotic cell cycle phase transition	(15 genes)	IEA

GO CC

GO:0000307 [list] [network] cyclin-dependent protein kinase holoenzyme complex	(27 genes)	IEA
GO:0005634 [list] [network] nucleus	(1576 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(2907 genes)	IEA

GO MF

GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity

(15 genes)

IEA

Protein

XP_001695520.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, chlo 1, nucl 1, mito 1, plas 1, pero 1, nucl_plas 1, mito_plas 1

(predict for XP_001695520.2)

Subcellular
localization
TargetP

other 8, chlo 3

(predict for XP_001695520.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_06g289750v5	cre-r.1 for CHLRE_11g467772v5	cre-r.1 for CHLRE_06g284350v5	cre-r.1 for CHLRE_09g414416v5	ath-u.5 for CYCD2;1	ath-u.5 for CYCD1;1	ath-u.5 for CYCD3;2	gma-u.5 for 100802683	gma-u.5 for 100811122	gma-u.5 for 100812660	sly-u.5 for cycd3c2	sly-u.5 for cycd3c3	osa-u.5 for 9272445	osa-u.5 for 4331985	zma-u.5 for 100283538	zma-u.5 for 100285876	bra-r.6 for 103846805	vvi-u.5 for 100854424	vvi-u.5 for 104878152	ppo-u.5 for 7478749	ppo-u.5 for 7462617	mtr-u.5 for 11433995	mtr-u.5 for 11431822	mtr-u.5 for 11420885	tae-r.2 for 123044173	tae-r.2 for 123052052	hvu-r.1 for 123425263	hvu-r.1 for 123452775	hvu-r.1 for 123402224	ghi-r.1 for 107911621	ghi-r.1 for 107913282	ghi-r.1 for 107913300	bna-r.1 for 106409485	bna-r.1 for 106410589	bna-r.1 for 106411811	sbi-r.1 for 8063725	sbi-r.1 for 8061553	sot-r.1 for 102600091	sot-r.1 for 102605668	cit-r.1 for 102622171	cit-r.1 for 102630732	cit-r.1 for 102628473	bdi-r.1 for 100821457	bdi-r.1 for 100841255	bdi-r.1 for 100836992	nta-r.1 for 107811128	nta-r.1 for 107782437	nta-r.1 for 107782163

Ortholog

Ortholog ID: 67

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

CHLRE_11g467772v5

CHLRE_06g284350v5

CHLRE_09g414416v5

CYCD1;1

CYCD4;1

CYCD3;3

cycD3

Function^*

uncharacterized protein

CYCLIN D1;1

CYCLIN D4;1

CYCLIN D3;3

cyclin-D5-1

cyclin-D3-3

cyclin-D3-1-like

cyclin D3.1

cyclin-D2-1

cyclin-D3-1-like

cyclin-D2-1-like

cyclin-D4-2-like

cyclin-D4-1

uncharacterized LOC100273934

cyclin-D5-1

cyclin-D2-1

cyclin-D3-2

uncharacterized LOC104878152

cyclin-D1-1

cyclin-D4-2

cyclin-D3-1

cyclin-D5-1

cyclin-D2-2

cyclin-D2-1

cyclin-D4-1-like

cyclin-D5-3-like

cyclin-D5-1-like

cyclin-D4-2

cyclin-D3-1

cyclin-D3-3

cyclin-D4-1-like

cyclin-D3-3

cyclin-D3-1

cyclin-D5-2

cyclin-D3-3-like

cyclin-D4-1-like

cyclin-D2-2-like

cyclin-D5-1

cyclin-D4-2

cyclin-D5-3

cyclin-D4-1-like

cyclin-D3-2

cyclin-D4-1-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03030	DNA replication	6
ath03420	Nucleotide excision repair	3
ath03430	Mismatch repair	3
ath03440	Homologous recombination	3
ath03460	Fanconi anemia pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04145	Phagosome	2
ath04517	IgSF CAM signaling	2
ath04814	Motor proteins	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2
gma00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00240	Pyrimidine metabolism	2
sly01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03030	DNA replication	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	4
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00010	Glycolysis / Gluconeogenesis	2
bra00500	Starch and sucrose metabolism	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00010	Glycolysis / Gluconeogenesis	2
vvi00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00944	Flavone and flavonol biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00460	Cyanoamino acid metabolism	3
tae00500	Starch and sucrose metabolism	3
tae00999	Biosynthesis of various plant secondary metabolites	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	5
ghi04145	Phagosome	2
ghi04148	Efferocytosis	2
ghi04517	IgSF CAM signaling	2
ghi04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03030	DNA replication	7
bna00270	Cysteine and methionine metabolism	2
bna03410	Base excision repair	2
bna03420	Nucleotide excision repair	2
bna03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	8
sbi03030	DNA replication	5
sbi04145	Phagosome	3
sbi03060	Protein export	3
sbi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03030	DNA replication	7
sot04075	Plant hormone signal transduction	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00520	Amino sugar and nucleotide sugar metabolism	2
cit01240	Biosynthesis of cofactors	2
cit01250	Biosynthesis of nucleotide sugars	2
cit00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04814	Motor proteins	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00053	Ascorbate and aldarate metabolism	6
nta00520	Amino sugar and nucleotide sugar metabolism	6
nta01240	Biosynthesis of cofactors	6
nta01250	Biosynthesis of nucleotide sugars	6
nta00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	5
nta04145	Phagosome	4
nta04517	IgSF CAM signaling	4
nta04814	Motor proteins	4
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00053	Ascorbate and aldarate metabolism	3
nta00520	Amino sugar and nucleotide sugar metabolism	3
nta01240	Biosynthesis of cofactors	3
nta01250	Biosynthesis of nucleotide sugars	3
nta00240	Pyrimidine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

5725073

5720978

5722348

843357

836667

824169

100798728

100807175

100804102

543748

101248769

4340499

4346937

103643161

103647502

100273934

103862565

103864358

103829523

104878152

100255261

100247298

7490056

18104838

11433995

25489960

123052052

123121432

123398931

123449393

123451148

107899915

107908885

107932943

106409485

106417667

106402828

8078902

8074298

102583812

102630732

102627697

102606606

100841255

100832008

107782437

107782163

107776537

The preparation time of this page was 0.2 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	4	3	3	2	2	2	1	2	2	3	2	3	3	3	2	2	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_06g289750v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_06g289750v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**