ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_06g290150v5	uncharacterized protein
ath-u.5	AT1G69210	Uncharacterized protein family UPF0090
ath-u.5	AT1G77122	Uncharacterized protein family UPF0090
gma-u.5	100783320	uncharacterized LOC100783320
gma-u.5	100803868	uncharacterized LOC100803868
gma-u.5	100806065	uncharacterized LOC100806065
sly-u.5	101261710	uncharacterized LOC101261710
osa-u.5	4342430	uncharacterized LOC4342430
osa-u.5	4335917	uncharacterized LOC4335917
zma-u.5	100216947	Uncharacterized protein family UPF0090
zma-u.5	100276934	uncharacterized LOC100276934
bra-r.6	103832165	uncharacterized LOC103832165
vvi-u.5	100259261	uncharacterized LOC100259261
vvi-u.5	100266148	uncharacterized LOC100266148
ppo-u.5	7467834	uncharacterized LOC7467834
ppo-u.5	7468143	uncharacterized LOC7468143
mtr-u.5	11442066	uncharacterized LOC11442066
mtr-u.5	11411515	uncharacterized LOC11411515
tae-r.2	123052843	uncharacterized LOC123052843
tae-r.2	123045020	uncharacterized LOC123045020
tae-r.2	123045518	uncharacterized LOC123045518
hvu-r.1	123426231	uncharacterized LOC123426231
hvu-r.1	123426774	uncharacterized LOC123426774
ghi-r.1	107897121	uncharacterized LOC107897121
ghi-r.1	107920767	uncharacterized LOC107920767
ghi-r.1	107914123	uncharacterized LOC107914123
bna-r.1	BNACNNG26310D	uncharacterized BNACNNG26310D
bna-r.1	106392162	uncharacterized LOC106392162
bna-r.1	106420479	uncharacterized LOC106420479
sbi-r.1	8080322	uncharacterized LOC8080322
sot-r.1	102590652	uncharacterized LOC102590652
cit-r.1	102629113	uncharacterized LOC102629113
cit-r.1	102619783	uncharacterized LOC102619783
bdi-r.1	100840782	uncharacterized LOC100840782
bdi-r.1	100842923	uncharacterized LOC100842923
nta-r.1	107768953	uncharacterized LOC107768953
nta-r.1	107792005	uncharacterized LOC107792005
nta-r.1	107785539	uncharacterized LOC107785539

Top 50 coexpressed genes to CHLRE_06g290150v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_06g290150v5 (cre-r.1 coexpression data)

CoexMap"5721079"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0042274 [list] [network] ribosomal small subunit biogenesis

(56 genes)

IEA

GO CC

GO MF

Protein

XP_042924114.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9

(predict for XP_042924114.1)

Subcellular
localization
TargetP

mito 5, chlo 4

(predict for XP_042924114.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_06g290150v5	ath-u.5 for AT1G69210	ath-u.5 for AT1G77122	gma-u.5 for 100783320	gma-u.5 for 100803868	gma-u.5 for 100806065	sly-u.5 for 101261710	osa-u.5 for 4342430	osa-u.5 for 4335917	zma-u.5 for 100216947	zma-u.5 for 100276934	bra-r.6 for 103832165	vvi-u.5 for 100259261	vvi-u.5 for 100266148	ppo-u.5 for 7467834	ppo-u.5 for 7468143	mtr-u.5 for 11442066	mtr-u.5 for 11411515	tae-r.2 for 123052843	tae-r.2 for 123045020	tae-r.2 for 123045518	hvu-r.1 for 123426231	hvu-r.1 for 123426774	ghi-r.1 for 107897121	ghi-r.1 for 107920767	ghi-r.1 for 107914123	bna-r.1 for BNACNNG26310D	bna-r.1 for 106392162	bna-r.1 for 106420479	sbi-r.1 for 8080322	sot-r.1 for 102590652	cit-r.1 for 102629113	cit-r.1 for 102619783	bdi-r.1 for 100840782	bdi-r.1 for 100842923	nta-r.1 for 107768953	nta-r.1 for 107792005	nta-r.1 for 107785539

Ortholog

Ortholog ID: 4013

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

Uncharacterized protein family UPF0090

uncharacterized LOC100783320

uncharacterized LOC100803868

uncharacterized LOC100806065

uncharacterized LOC101261710

uncharacterized LOC4342430

uncharacterized LOC4335917

Uncharacterized protein family UPF0090

uncharacterized LOC100276934

uncharacterized LOC103832165

uncharacterized LOC100259261

uncharacterized LOC100266148

uncharacterized LOC7467834

uncharacterized LOC7468143

uncharacterized LOC11442066

uncharacterized LOC11411515

uncharacterized LOC123052843

uncharacterized LOC123053365

uncharacterized LOC123189270

uncharacterized LOC123426231

uncharacterized LOC123426774

uncharacterized LOC107897121

uncharacterized LOC107920767

uncharacterized LOC107893897

uncharacterized BNACNNG26310D

uncharacterized LOC106392162

uncharacterized LOC106354629

uncharacterized LOC8080322

uncharacterized LOC102590652

uncharacterized LOC102629113

uncharacterized LOC102619783

uncharacterized LOC100840782

uncharacterized LOC100842923

uncharacterized LOC107768953

uncharacterized LOC107785539

uncharacterized LOC107769416

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	3
gma03018	RNA degradation	3
gma03040	Spliceosome	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma04141	Protein processing in endoplasmic reticulum	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	6
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01240	Biosynthesis of cofactors	3
vvi00790	Folate biosynthesis	2
vvi04122	Sulfur relay system	2
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2
ppo01240	Biosynthesis of cofactors	2
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	2
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03440	Homologous recombination	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04626	Plant-pathogen interaction	2
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01240	Biosynthesis of cofactors	3
bdi00970	Aminoacyl-tRNA biosynthesis	2
bdi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00250	Alanine, aspartate and glutamate metabolism	7
nta01240	Biosynthesis of cofactors	7
nta00240	Pyrimidine metabolism	4
nta00230	Purine metabolism	3
nta01232	Nucleotide metabolism	3

Expression

Expression pattern

Entrez Gene ID^*

5721079

843252

844048

100783320

100803868

100806065

101261710

4342430

4335917

100216947

100276934

103832165

100259261

100266148

7467834

7468143

11442066

11411515

123052843

123053365

123189270

123426231

123426774

107897121

107920767

107893897

106354490

106392162

106354629

8080322

102590652

102629113

102619783

100840782

100842923

107768953

107785539

107769416

The preparation time of this page was 0.3 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	2	3	1	2	2	1	2	2	2	3	2	3	3	1	1	2	2	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_06g290150v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_06g290150v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**