ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_03g144284v5	uncharacterized protein
ath-u.5	BPM3	BTB/POZ/MATH-domains containing protein
ath-u.5	BPM2	BTB-POZ and MATH domain 2
ath-u.5	BPM4	BTB-POZ and MATH domain 4
gma-u.5	100799666	BTB/POZ and MATH domain-containing protein 2
sly-u.5	101243825	BTB/POZ and MATH domain-containing protein 2-like
sly-u.5	101265402	BTB/POZ and MATH domain-containing protein 4
sly-u.5	101262855	BTB/POZ and MATH domain-containing protein 2
zma-u.5	100191618	uncharacterized LOC100191618
zma-u.5	100284563	uncharacterized LOC100284563
zma-u.5	100273191	uncharacterized LOC100273191
bra-r.6	103854464	BTB/POZ and MATH domain-containing protein 2
bra-r.6	103828213	BTB/POZ and MATH domain-containing protein 4
bra-r.6	103857880	BTB/POZ and MATH domain-containing protein 3
vvi-u.5	100259862	BTB/POZ and MATH domain-containing protein 4
vvi-u.5	100255401	BTB/POZ and MATH domain-containing protein 4
vvi-u.5	100240933	BTB/POZ and MATH domain-containing protein 1
ppo-u.5	7478592	BTB/POZ and MATH domain-containing protein 4
ppo-u.5	7475930	BTB/POZ and MATH domain-containing protein 2
ppo-u.5	7458122	BTB/POZ and MATH domain-containing protein 3
mtr-u.5	11421436	BTB/POZ and MATH domain-containing protein 4
mtr-u.5	11434597	BTB/POZ and MATH domain-containing protein 2
tae-r.2	101290586	BTB/POZ and MATH domain-containing protein 5
tae-r.2	123043928	BTB/POZ and MATH domain-containing protein 1
tae-r.2	123038435	BTB/POZ and MATH domain-containing protein 1
hvu-r.1	123407345	BTB/POZ and MATH domain-containing protein 2-like
hvu-r.1	123424977	BTB/POZ and MATH domain-containing protein 1-like
hvu-r.1	123426126	BTB/POZ and MATH domain-containing protein 5-like
ghi-r.1	107913631	BTB/POZ and MATH domain-containing protein 4
ghi-r.1	107943812	BTB/POZ and MATH domain-containing protein 2
ghi-r.1	107949949	BTB/POZ and MATH domain-containing protein 2
bna-r.1	106424385	BTB/POZ and MATH domain-containing protein 2-like
bna-r.1	106391553	BTB/POZ and MATH domain-containing protein 3
bna-r.1	106388844	BTB/POZ and MATH domain-containing protein 2
sbi-r.1	8073235	BTB/POZ and MATH domain-containing protein 1
sbi-r.1	8073247	BTB/POZ and MATH domain-containing protein 1
sot-r.1	102595349	BTB/POZ and MATH domain-containing protein 3
sot-r.1	102588086	BTB/POZ and MATH domain-containing protein 4-like
sot-r.1	102602768	BTB/POZ and MATH domain-containing protein 2
cit-r.1	102613280	BTB/POZ and MATH domain-containing protein 4
cit-r.1	102630977	BTB/POZ and MATH domain-containing protein 3
cit-r.1	102628741	BTB/POZ and MATH domain-containing protein 2
bdi-r.1	100826820	BTB/POZ and MATH domain-containing protein 2
nta-r.1	107762846	BTB/POZ and MATH domain-containing protein 2
nta-r.1	107766481	BTB/POZ and MATH domain-containing protein 3
nta-r.1	107787422	BTB/POZ and MATH domain-containing protein 2

Top 50 coexpressed genes to CHLRE_03g144284v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_03g144284v5 (cre-r.1 coexpression data)

CoexMap"5721311"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016567 [list] [network] protein ubiquitination

(136 genes)

IEA

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(1927 genes)

IEA

Protein

XP_042925503.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, mito 3, cyto_pero 3

(predict for XP_042925503.1)

Subcellular
localization
TargetP

other 8

(predict for XP_042925503.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_03g144284v5	ath-u.5 for BPM3	ath-u.5 for BPM2	ath-u.5 for BPM4	gma-u.5 for 100799666	sly-u.5 for 101243825	sly-u.5 for 101265402	sly-u.5 for 101262855	zma-u.5 for 100191618	zma-u.5 for 100284563	zma-u.5 for 100273191	bra-r.6 for 103854464	bra-r.6 for 103828213	bra-r.6 for 103857880	vvi-u.5 for 100259862	vvi-u.5 for 100255401	vvi-u.5 for 100240933	ppo-u.5 for 7478592	ppo-u.5 for 7475930	ppo-u.5 for 7458122	mtr-u.5 for 11421436	mtr-u.5 for 11434597	tae-r.2 for 101290586	tae-r.2 for 123043928	tae-r.2 for 123038435	hvu-r.1 for 123407345	hvu-r.1 for 123424977	hvu-r.1 for 123426126	ghi-r.1 for 107913631	ghi-r.1 for 107943812	ghi-r.1 for 107949949	bna-r.1 for 106424385	bna-r.1 for 106391553	bna-r.1 for 106388844	sbi-r.1 for 8073235	sbi-r.1 for 8073247	sot-r.1 for 102595349	sot-r.1 for 102588086	sot-r.1 for 102602768	cit-r.1 for 102613280	cit-r.1 for 102630977	cit-r.1 for 102628741	bdi-r.1 for 100826820	nta-r.1 for 107762846	nta-r.1 for 107766481	nta-r.1 for 107787422

Ortholog

Ortholog ID: 193

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

CHLRE_03g144284v5

BPM3

BPM2

BPM1

Function^*

uncharacterized protein

BTB/POZ/MATH-domains containing protein

BTB-POZ and MATH domain 2

BTB-POZ and MATH domain 1

BTB/POZ and MATH domain-containing protein 2

BTB/POZ and MATH domain-containing protein 4-like

BTB/POZ and MATH domain-containing protein 3

BTB/POZ and MATH domain-containing protein 1

BTB/POZ and MATH domain-containing protein 5

uncharacterized LOC100273191

BTB/POZ and MATH domain-containing protein 2

BTB/POZ and MATH domain-containing protein 3

BTB/POZ and MATH domain-containing protein 2

BTB/POZ and MATH domain-containing protein 5

BTB/POZ and MATH domain-containing protein 4

BTB/POZ and MATH domain-containing protein 1

BTB/POZ and MATH domain-containing protein 2

BTB/POZ and MATH domain-containing protein 4

BTB/POZ and MATH domain-containing protein 3

BTB/POZ and MATH domain-containing protein 2

BTB/POZ and MATH domain-containing protein 4

BTB/POZ and MATH domain-containing protein 3

BTB/POZ and MATH domain-containing protein 1

BTB/POZ and MATH domain-containing protein 5-like

BTB/POZ and MATH domain-containing protein 3-like

BTB/POZ and MATH domain-containing protein 2-like

BTB/POZ and MATH domain-containing protein 2

BTB/POZ and MATH domain-containing protein 3

BTB/POZ and MATH domain-containing protein 4

BTB/POZ and MATH domain-containing protein 3

BTB/POZ and MATH domain-containing protein 5

BTB/POZ and MATH domain-containing protein 2-like

BTB/POZ and MATH domain-containing protein 1

BTB/POZ and MATH domain-containing protein 2

BTB/POZ and MATH domain-containing protein 5

BTB/POZ and MATH domain-containing protein 3

BTB/POZ and MATH domain-containing protein 2

BTB/POZ and MATH domain-containing protein 4-like

BTB/POZ and MATH domain-containing protein 4

BTB/POZ and MATH domain-containing protein 3

BTB/POZ and MATH domain-containing protein 2

BTB/POZ and MATH domain-containing protein 3

BTB/POZ and MATH domain-containing protein 5

BTB/POZ and MATH domain-containing protein 2

BTB/POZ and MATH domain-containing protein 3

BTB/POZ and MATH domain-containing protein 4

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	3
bra04141	Protein processing in endoplasmic reticulum	2
bra03250	Viral life cycle - HIV-1	2
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2
vvi03015	mRNA surveillance pathway	2
vvi00562	Inositol phosphate metabolism	2
vvi04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
mtr01240	Biosynthesis of cofactors	2
mtr00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03022	Basal transcription factors	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00770	Pantothenate and CoA biosynthesis	5
bna01240	Biosynthesis of cofactors	5
bna03082	ATP-dependent chromatin remodeling	4
bna03083	Polycomb repressive complex	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	2
bna04141	Protein processing in endoplasmic reticulum	2
bna04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	3
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	3
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	2
cit04142	Lysosome	2
cit03250	Viral life cycle - HIV-1	2
cit03272	Virion - Hepatitis viruses	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	3
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00905	Brassinosteroid biosynthesis	2
nta03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

5721311

818561

819793

832018

100811065

101262855

101252710

101249364

4344139

4334388

100273191

100272403

100274226

103854464

103849990

103856478

100259862

100240933

100258076

7478592

7458122

7467565

11434597

11435912

123045163

123051792

123426126

123426390

123427908

107957079

107900460

107942182

106391553

106386979

125585446

8073235

8066817

8061186

102595349

102602768

102599562

102613280

102630977

102628741

100828421

100826375

107762846

107810441

107812473

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Species	cre	ath	gma	sly	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta	osa
Paralog	1	3	1	3	3	3	3	3	2	3	3	3	3	2	3	3	1	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_03g144284v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_03g144284v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**