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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g676197v5   uncharacterized protein 
 ath-u.5   RPN1A   26S proteasome regulatory subunit S2 1A 
 ath-u.5   RPN1B   26S proteasome regulatory subunit S2 1B 
 gma-u.5   100777078   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 gma-u.5   100799779   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 sly-u.5   101252199   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 sly-u.5   101261464   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 osa-u.5   4328287   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 osa-u.5   4346741   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 osa-u.5   4341960   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 zma-u.5   100384330   uncharacterized LOC100384330 
 zma-u.5   103654920   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 bra-r.6   103861833   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 bra-r.6   103834759   26S proteasome non-ATPase regulatory subunit 2 homolog B 
 bra-r.6   103854417   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 vvi-u.5   100255701   26S proteasome regulatory subunit N1-like 
 ppo-u.5   18106797   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 ppo-u.5   7469564   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 mtr-u.5   11445486   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 tae-r.2   123143777   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 tae-r.2   123132233   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 tae-r.2   123136272   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 hvu-r.1   123411463   26S proteasome non-ATPase regulatory subunit 2 homolog A-like 
 hvu-r.1   123403294   26S proteasome non-ATPase regulatory subunit 2 homolog A-like 
 ghi-r.1   107929387   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 ghi-r.1   107938468   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 ghi-r.1   107933092   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 bna-r.1   106440995   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 bna-r.1   106361196   26S proteasome non-ATPase regulatory subunit 2 homolog B 
 bna-r.1   106380689   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 sbi-r.1   8069964   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 sot-r.1   102586490   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 sot-r.1   102593788   26S proteasome non-ATPase regulatory subunit 2 homolog A-like 
 cit-r.1   102617825   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 bdi-r.1   100837709   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 nta-r.1   107789750   26S proteasome non-ATPase regulatory subunit 2 homolog A 
 nta-r.1   107794282   26S proteasome non-ATPase regulatory subunit 2 homolog A-like 
 nta-r.1   107812562   26S proteasome non-ATPase regulatory subunit 2 homolog A-like 

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Top 50 coexpressed genes to CHLRE_16g676197v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g676197v5 (cre-r.1 coexpression data)

CoexMap"5721356"


creCHLRE_16g676197v5 | Entrez gene ID : 5721356      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 2 2 3 2 3 1 2 1 3 2 3 3 1 2 1 1 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03050 [list] [network] Proteasome (36 genes)
GO BP
GO:0042176 [list] [network] regulation of protein catabolic process  (26 genes)  IEA  
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (98 genes)  IEA  
GO CC
GO:0034515 [list] [network] proteasome storage granule  (2 genes)  IEA  
GO:0008540 [list] [network] proteasome regulatory particle, base subcomplex  (11 genes)  IEA  
GO:0000502 [list] [network] proteasome complex  (38 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0030234 [list] [network] enzyme regulator activity  (139 genes)  IEA  
Protein XP_042916205.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 8,  golg 1  (predict for XP_042916205.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042916205.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g676197v5
ath-u.5
for
RPN1A
ath-u.5
for
RPN1B
gma-u.5
for
100777078
gma-u.5
for
100799779
sly-u.5
for
101252199
sly-u.5
for
101261464
osa-u.5
for
4328287
osa-u.5
for
4346741
osa-u.5
for
4341960
zma-u.5
for
100384330
zma-u.5
for
103654920
bra-r.6
for
103861833
bra-r.6
for
103834759
bra-r.6
for
103854417
vvi-u.5
for
100255701
ppo-u.5
for
18106797
ppo-u.5
for
7469564
mtr-u.5
for
11445486
tae-r.2
for
123143777
tae-r.2
for
123132233
tae-r.2
for
123136272
hvu-r.1
for
123411463
hvu-r.1
for
123403294
ghi-r.1
for
107929387
ghi-r.1
for
107938468
ghi-r.1
for
107933092
bna-r.1
for
106440995
bna-r.1
for
106361196
bna-r.1
for
106380689
sbi-r.1
for
8069964
sot-r.1
for
102586490
sot-r.1
for
102593788
cit-r.1
for
102617825
bdi-r.1
for
100837709
nta-r.1
for
107789750
nta-r.1
for
107794282
nta-r.1
for
107812562


Ortholog ID: 3548
Species cre ath ath gma gma sly sly osa osa osa zma zma bra bra bra vvi ppo ppo mtr tae tae tae hvu hvu ghi ghi ghi bna bna bna sbi sot sot cit bdi nta nta nta
Symbol CHLRE_16g676197v5 RPN1A RPN1B LOC100777078 LOC100799779 LOC101252199 LOC101261464 LOC4328287 LOC4346741 LOC4341960 LOC100384330 LOC103654920 LOC103861833 LOC103854417 LOC103828246 LOC100255701 LOC18106797 LOC7469564 LOC11445486 LOC123143777 LOC123132233 LOC123136272 LOC123411463 LOC123403294 LOC107929387 LOC107938468 LOC107933092 LOC106440995 LOC106361196 LOC106380689 LOC8069964 LOC102586490 LOC102593788 LOC102617825 LOC100837709 LOC107789750 LOC107794282 LOC107812562
Function* uncharacterized protein 26S proteasome regulatory subunit S2 1A 26S proteasome regulatory subunit S2 1B 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A uncharacterized LOC100384330 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A-like 26S proteasome regulatory subunit N1-like 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A-like 26S proteasome non-ATPase regulatory subunit 2 homolog A-like 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog B 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A-like 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A 26S proteasome non-ATPase regulatory subunit 2 homolog A-like 26S proteasome non-ATPase regulatory subunit 2 homolog A-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 13
ath04141 Protein processing in endoplasmic reticulum 3
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 6
ath04141 Protein processing in endoplasmic reticulum 3
ath04120 Ubiquitin mediated proteolysis 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 9
gma03015 mRNA surveillance pathway 2
gma04382 Cornified envelope formation 2
gma03040 Spliceosome 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 6
gma03050 Proteasome 6
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03420 Nucleotide excision repair 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 10
sly00970 Aminoacyl-tRNA biosynthesis 3
sly04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 6
zma04120 Ubiquitin mediated proteolysis 4
zma04141 Protein processing in endoplasmic reticulum 3
zma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03050 Proteasome 2
zma00970 Aminoacyl-tRNA biosynthesis 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 7
bra04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 13
bra04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 6
vvi04141 Protein processing in endoplasmic reticulum 4
vvi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00510 N-Glycan biosynthesis 5
ppo00513 Various types of N-glycan biosynthesis 5
ppo04141 Protein processing in endoplasmic reticulum 5
ppo00020 Citrate cycle (TCA cycle) 4
ppo01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 14
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 8
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 6
tae04141 Protein processing in endoplasmic reticulum 6
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 2
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 6
hvu04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 11
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 11
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 7
bna00010 Glycolysis / Gluconeogenesis 3
bna01200 Carbon metabolism 3
bna01230 Biosynthesis of amino acids 3
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 7
bna00010 Glycolysis / Gluconeogenesis 3
bna01200 Carbon metabolism 3
bna01230 Biosynthesis of amino acids 3
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 7
bna00010 Glycolysis / Gluconeogenesis 2
bna01200 Carbon metabolism 2
bna01230 Biosynthesis of amino acids 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00020 Citrate cycle (TCA cycle) 2
sbi01200 Carbon metabolism 2
sbi00190 Oxidative phosphorylation 2
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 6
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04082 Neuroactive ligand signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 5
cit03050 Proteasome 4
cit04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 5
bdi04141 Protein processing in endoplasmic reticulum 3
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 7
nta04075 Plant hormone signal transduction 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 7
nta04075 Plant hormone signal transduction 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 8
nta04075 Plant hormone signal transduction 2
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5721356 816580 828964 100777078 100799779 101252199 101261464 4328287 4346741 4341960 100384330 103654920 103861833 103854417 103828246 100255701 18106797 7469564 11445486 123143777 123132233 123136272 123411463 123403294 107929387 107938468 107933092 106440995 106361196 106380689 8069964 102586490 102593788 102617825 100837709 107789750 107794282 107812562
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