ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_16g673900v5	uncharacterized protein
ath-u.5	AT3G49000	RNA polymerase III subunit RPC82 family protein
gma-u.5	100803947	DNA-directed RNA polymerase III subunit RPC3
gma-u.5	100784750	DNA-directed RNA polymerase III subunit rpc3
sly-u.5	101264729	uncharacterized LOC101264729
osa-u.5	4325277	uncharacterized LOC4325277
zma-u.5	118474729	DNA-directed RNA polymerase III subunit RPC3-like
zma-u.5	103651514	uncharacterized LOC103651514
bra-r.6	103828227	uncharacterized LOC103828227
bra-r.6	103873509	uncharacterized LOC103873509
vvi-u.5	100267008	uncharacterized LOC100267008
vvi-u.5	104879248	uncharacterized LOC104879248
ppo-u.5	7474050	uncharacterized LOC7474050
mtr-u.5	11419754	DNA-directed RNA polymerase III subunit RPC3
tae-r.2	123061884	DNA-directed RNA polymerase III subunit RPC3
tae-r.2	123110375	DNA-directed RNA polymerase III subunit RPC3
tae-r.2	123070579	DNA-directed RNA polymerase III subunit RPC3
hvu-r.1	123444106	DNA-directed RNA polymerase III subunit rpc3
ghi-r.1	107888743	DNA-directed RNA polymerase III subunit RPC3
ghi-r.1	107892078	DNA-directed RNA polymerase III subunit RPC3
bna-r.1	106387833	uncharacterized LOC106387833
bna-r.1	106365520	uncharacterized LOC106365520
sbi-r.1	8068018	DNA-directed RNA polymerase III subunit rpc3
sot-r.1	102597386	DNA-directed RNA polymerase III subunit RPC3
cit-r.1	102613614	uncharacterized LOC102613614
bdi-r.1	100837993	DNA-directed RNA polymerase III subunit RPC3
nta-r.1	107813670	uncharacterized LOC107813670
nta-r.1	107774832	uncharacterized LOC107774832

Annotation

functional annotation

KEGG

cre03020 [list] [network] RNA polymerase (29 genes)

GO BP

GO:0006351 [list] [network] DNA-templated transcription

(95 genes)

IEA

GO CC

GO:0005666 [list] [network] RNA polymerase III complex

(16 genes)

IEA

GO MF

GO:0003697 [list] [network] single-stranded DNA binding

(46 genes)

IEA

Protein

XP_042916139.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, chlo 1, nucl 1, mito 1, chlo_mito 1

(predict for XP_042916139.1)

Subcellular
localization
TargetP

other 6, mito 4

(predict for XP_042916139.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_16g673900v5	ath-u.5 for AT3G49000	gma-u.5 for 100803947	gma-u.5 for 100784750	sly-u.5 for 101264729	osa-u.5 for 4325277	zma-u.5 for 118474729	zma-u.5 for 103651514	bra-r.6 for 103828227	bra-r.6 for 103873509	vvi-u.5 for 100267008	vvi-u.5 for 104879248	ppo-u.5 for 7474050	mtr-u.5 for 11419754	tae-r.2 for 123061884	tae-r.2 for 123110375	tae-r.2 for 123070579	hvu-r.1 for 123444106	ghi-r.1 for 107888743	ghi-r.1 for 107892078	bna-r.1 for 106387833	bna-r.1 for 106365520	sbi-r.1 for 8068018	sot-r.1 for 102597386	cit-r.1 for 102613614	bdi-r.1 for 100837993	nta-r.1 for 107813670	nta-r.1 for 107774832

Ortholog

Ortholog ID: 7243

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

RNA polymerase III subunit RPC82 family protein

DNA-directed RNA polymerase III subunit RPC3

DNA-directed RNA polymerase III subunit rpc3

uncharacterized LOC101264729

uncharacterized LOC4325277

DNA-directed RNA polymerase III subunit RPC3-like

uncharacterized LOC103651514

uncharacterized LOC103828227

uncharacterized LOC103873509

uncharacterized LOC100267008

uncharacterized LOC104879248

uncharacterized LOC7474050

DNA-directed RNA polymerase III subunit RPC3

DNA-directed RNA polymerase III subunit rpc3

DNA-directed RNA polymerase III subunit RPC3

uncharacterized LOC106387833

uncharacterized LOC106365520

DNA-directed RNA polymerase III subunit rpc3

DNA-directed RNA polymerase III subunit RPC3

uncharacterized LOC102613614

DNA-directed RNA polymerase III subunit RPC3

uncharacterized LOC107813670

uncharacterized LOC107774832

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	6
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	4
sly03018	RNA degradation	3
sly03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03020	RNA polymerase	3
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	3
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	4
tae03440	Homologous recombination	3
tae03450	Non-homologous end-joining	3
tae03022	Basal transcription factors	2
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	6
tae03440	Homologous recombination	3
tae03450	Non-homologous end-joining	3
tae00310	Lysine degradation	3
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03440	Homologous recombination	3
tae03450	Non-homologous end-joining	3
tae03013	Nucleocytoplasmic transport	3
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	6
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	2
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03020	RNA polymerase	2
sbi00970	Aminoacyl-tRNA biosynthesis	2
sbi00340	Histidine metabolism	2
sbi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03450	Non-homologous end-joining	2
bdi03020	RNA polymerase	2
bdi03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03020	RNA polymerase	2

Expression

Expression pattern

Entrez Gene ID^*

5721432

824061

100803947

102663439

101264729

4325277

118474729

103651514

103828227

103873509

100267008

104879248

7474050

11419754

123061884

123070579

123078982

123444106

107888743

107892078

106387833

106365520

8068018

102597386

102613614

100837993

107813670

107774832

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_16g673900v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_16g673900v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	1	1	2	2	2	1	1	3	1	2	2	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_16g673900v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_16g673900v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**