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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g676400v5   uncharacterized protein 
 ath-u.5   AT1G20920   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 gma-u.5   100784306   DEAD-box ATP-dependent RNA helicase 42 
 gma-u.5   100806467   DEAD-box ATP-dependent RNA helicase 42 
 osa-u.5   4344716   DEAD-box ATP-dependent RNA helicase 42-like 
 osa-u.5   4344682   DEAD-box ATP-dependent RNA helicase 45 
 zma-u.5   100381523   uncharacterized LOC100381523 
 bra-r.6   103872879   DEAD-box ATP-dependent RNA helicase 42 
 bra-r.6   103870532   DEAD-box ATP-dependent RNA helicase 42 
 vvi-u.5   100262258   DEAD-box ATP-dependent RNA helicase 42 
 ppo-u.5   7471740   DEAD-box ATP-dependent RNA helicase 42 
 ppo-u.5   7494729   DEAD-box ATP-dependent RNA helicase 42 
 mtr-u.5   11418819   DEAD-box ATP-dependent RNA helicase 42 
 tae-r.2   123147247   DEAD-box ATP-dependent RNA helicase 42 
 tae-r.2   123168111   DEAD-box ATP-dependent RNA helicase 42 
 hvu-r.1   123413157   DEAD-box ATP-dependent RNA helicase 42-like 
 ghi-r.1   107942493   DEAD-box ATP-dependent RNA helicase 42 
 ghi-r.1   107934396   DEAD-box ATP-dependent RNA helicase 42 
 bna-r.1   106421327   DEAD-box ATP-dependent RNA helicase 42-like 
 bna-r.1   106347293   DEAD-box ATP-dependent RNA helicase 42 
 sbi-r.1   8080853   DEAD-box ATP-dependent RNA helicase 42 
 sbi-r.1   8074046   DEAD-box ATP-dependent RNA helicase 42 
 sot-r.1   102600584   DEAD-box ATP-dependent RNA helicase 42 
 cit-r.1   102628811   DEAD-box ATP-dependent RNA helicase 42-like 
 bdi-r.1   100846703   DEAD-box ATP-dependent RNA helicase 42 
 nta-r.1   142161616   DEAD-box ATP-dependent RNA helicase 45-like 
 nta-r.1   142161659   DEAD-box ATP-dependent RNA helicase 45-like 

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Top 50 coexpressed genes to CHLRE_16g676400v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g676400v5 (cre-r.1 coexpression data)

CoexMap"5721481"


creCHLRE_16g676400v5 | Entrez gene ID : 5721481    
Species cre ath gma osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta sly
Paralog 1 1 2 2 1 2 1 2 1 2 1 2 2 2 1 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (103 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (44 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042916088.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_042916088.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042916088.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g676400v5
ath-u.5
for
AT1G20920
gma-u.5
for
100784306
gma-u.5
for
100806467
osa-u.5
for
4344716
osa-u.5
for
4344682
zma-u.5
for
100381523
bra-r.6
for
103872879
bra-r.6
for
103870532
vvi-u.5
for
100262258
ppo-u.5
for
7471740
ppo-u.5
for
7494729
mtr-u.5
for
11418819
tae-r.2
for
123147247
tae-r.2
for
123168111
hvu-r.1
for
123413157
ghi-r.1
for
107942493
ghi-r.1
for
107934396
bna-r.1
for
106421327
bna-r.1
for
106347293
sbi-r.1
for
8080853
sbi-r.1
for
8074046
sot-r.1
for
102600584
cit-r.1
for
102628811
bdi-r.1
for
100846703
nta-r.1
for
142161616
nta-r.1
for
142161659


Ortholog ID: 6258
Species cre ath gma gma osa osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sbi sot cit bdi nta nta
Symbol CHLRE_16g676400v5 AT1G20920 LOC100784306 LOC100806467 LOC4344716 LOC4344682 LOC100381523 LOC103872879 LOC103870532 LOC100262258 LOC7471740 LOC7494729 LOC11418819 LOC123168111 LOC123156230 LOC123413157 LOC107942493 LOC107934396 LOC106421327 LOC106347293 LOC8080853 LOC8074046 LOC102600584 LOC102628811 LOC100846703 LOC142161616 LOC142161659
Function* uncharacterized protein P-loop containing nucleoside triphosphate hydrolases superfamily protein DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42-like DEAD-box ATP-dependent RNA helicase 45 uncharacterized LOC100381523 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42-like DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42-like DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42-like DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 45-like DEAD-box ATP-dependent RNA helicase 45-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 7
cre03018 RNA degradation 3
cre03020 RNA polymerase 2
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5721481 838685 100784306 100806467 4344716 4344682 100381523 103872879 103870532 100262258 7471740 7494729 11418819 123168111 123156230 123413157 107942493 107934396 106421327 106347293 8080853 8074046 102600584 102628811 100846703 142161616 142161659
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