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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g275650v5   uncharacterized protein 
 ath-u.5   EMB2719   PAM domain (PCI/PINT associated module) protein 
 ath-u.5   AT1G75990   PAM domain (PCI/PINT associated module) protein 
 gma-u.5   100819526   probable 26S proteasome non-ATPase regulatory subunit 3 
 gma-u.5   100814379   probable 26S proteasome non-ATPase regulatory subunit 3 
 gma-u.5   100787034   probable 26S proteasome non-ATPase regulatory subunit 3 
 sly-u.5   101244534   PCI superfamily protein 
 osa-u.5   4346252   probable 26S proteasome non-ATPase regulatory subunit 3 
 osa-u.5   4347735   probable 26S proteasome non-ATPase regulatory subunit 3 
 zma-u.5   100282792   26S proteasome non-ATPase regulatory subunit 3 
 zma-u.5   100283005   uncharacterized LOC100283005 
 bra-r.6   103832045   26S proteasome non-ATPase regulatory subunit 3 homolog B 
 vvi-u.5   100264130   probable 26S proteasome non-ATPase regulatory subunit 3 
 vvi-u.5   100255691   probable 26S proteasome non-ATPase regulatory subunit 3 
 ppo-u.5   7494234   probable 26S proteasome non-ATPase regulatory subunit 3 
 ppo-u.5   7470413   probable 26S proteasome non-ATPase regulatory subunit 3 
 mtr-u.5   11439915   probable 26S proteasome non-ATPase regulatory subunit 3 
 mtr-u.5   11417232   probable 26S proteasome non-ATPase regulatory subunit 3 
 tae-r.2   123084969   probable 26S proteasome non-ATPase regulatory subunit 3 
 tae-r.2   123093147   probable 26S proteasome non-ATPase regulatory subunit 3 
 tae-r.2   123093149   probable 26S proteasome non-ATPase regulatory subunit 3 
 hvu-r.1   123400202   probable 26S proteasome non-ATPase regulatory subunit 3 
 hvu-r.1   123409228   probable 26S proteasome non-ATPase regulatory subunit 3 
 hvu-r.1   123449448   probable 26S proteasome non-ATPase regulatory subunit 3 
 ghi-r.1   107945069   probable 26S proteasome non-ATPase regulatory subunit 3 
 ghi-r.1   107922352   probable 26S proteasome non-ATPase regulatory subunit 3 
 ghi-r.1   107947201   probable 26S proteasome non-ATPase regulatory subunit 3 
 bna-r.1   106406159   26S proteasome non-ATPase regulatory subunit 3 homolog B 
 bna-r.1   106421645   26S proteasome non-ATPase regulatory subunit 3 homolog B 
 sbi-r.1   8057843   probable 26S proteasome non-ATPase regulatory subunit 3 
 cit-r.1   102622301   probable 26S proteasome non-ATPase regulatory subunit 3 
 bdi-r.1   100840664   probable 26S proteasome non-ATPase regulatory subunit 3 
 bdi-r.1   100838341   probable 26S proteasome non-ATPase regulatory subunit 3 
 nta-r.1   107767362   putative 26S proteasome non-ATPase regulatory subunit 3 
 nta-r.1   107767363   probable 26S proteasome non-ATPase regulatory subunit 3 
 nta-r.1   107814298   putative 26S proteasome non-ATPase regulatory subunit 3 

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Top 50 coexpressed genes to CHLRE_06g275650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g275650v5 (cre-r.1 coexpression data)

CoexMap"5721750"


creCHLRE_06g275650v5 | Entrez gene ID : 5721750      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi cit bdi nta sot
Paralog 1 2 3 1 2 2 1 2 2 2 3 3 3 2 1 1 2 3 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03050 [list] [network] Proteasome (36 genes)
GO BP
GO:0042176 [list] [network] regulation of protein catabolic process  (26 genes)  IEA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (159 genes)  IEA  
GO CC
GO:0008541 [list] [network] proteasome regulatory particle, lid subcomplex  (9 genes)  IEA  
GO:0000502 [list] [network] proteasome complex  (38 genes)  IEA  
GO MF
GO:0030234 [list] [network] enzyme regulator activity  (139 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_001696175.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  plas 2,  chlo_mito 2,  cyto 1,  mito_plas 1  (predict for XP_001696175.1)
Subcellular
localization
TargetP
other 9  (predict for XP_001696175.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g275650v5
ath-u.5
for
EMB2719
ath-u.5
for
AT1G75990
gma-u.5
for
100819526
gma-u.5
for
100814379
gma-u.5
for
100787034
sly-u.5
for
101244534
osa-u.5
for
4346252
osa-u.5
for
4347735
zma-u.5
for
100282792
zma-u.5
for
100283005
bra-r.6
for
103832045
vvi-u.5
for
100264130
vvi-u.5
for
100255691
ppo-u.5
for
7494234
ppo-u.5
for
7470413
mtr-u.5
for
11439915
mtr-u.5
for
11417232
tae-r.2
for
123084969
tae-r.2
for
123093147
tae-r.2
for
123093149
hvu-r.1
for
123400202
hvu-r.1
for
123409228
hvu-r.1
for
123449448
ghi-r.1
for
107945069
ghi-r.1
for
107922352
ghi-r.1
for
107947201
bna-r.1
for
106406159
bna-r.1
for
106421645
sbi-r.1
for
8057843
cit-r.1
for
102622301
bdi-r.1
for
100840664
bdi-r.1
for
100838341
nta-r.1
for
107767362
nta-r.1
for
107767363
nta-r.1
for
107814298


Ortholog ID: 4464
Species cre ath ath gma gma gma sly osa osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae tae hvu hvu hvu ghi ghi ghi bna bna sbi cit bdi bdi nta nta nta
Symbol CHLRE_06g275650v5 EMB2719 AT1G75990 LOC100819526 LOC100814379 LOC100787034 LOC101244534 LOC4346252 LOC4347735 LOC100282792 LOC100283005 LOC103832045 LOC100264130 LOC100255691 LOC7494234 LOC7470413 LOC11439915 LOC11417232 LOC123093147 LOC123104638 LOC123098420 LOC123400202 LOC123409228 LOC123449448 LOC107945069 LOC107922352 LOC107947201 LOC106406159 LOC106421645 LOC8057843 LOC102622301 LOC100840664 LOC100838341 LOC107767362 LOC107767363 LOC107809945
Function* uncharacterized protein PAM domain (PCI/PINT associated module) protein PAM domain (PCI/PINT associated module) protein probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 PCI superfamily protein probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 26S proteasome non-ATPase regulatory subunit 3 uncharacterized LOC100283005 26S proteasome non-ATPase regulatory subunit 3 homolog B probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 26S proteasome non-ATPase regulatory subunit 3 homolog B 26S proteasome non-ATPase regulatory subunit 3 homolog B probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 putative 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 putative 26S proteasome non-ATPase regulatory subunit 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01250 Biosynthesis of nucleotide sugars 3
ath04141 Protein processing in endoplasmic reticulum 2
ath00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 2
gma00020 Citrate cycle (TCA cycle) 2
gma00270 Cysteine and methionine metabolism 2
gma00566 Sulfoquinovose metabolism 2
gma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 7
gma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 10
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 15
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 9
zma00020 Citrate cycle (TCA cycle) 3
zma01200 Carbon metabolism 3
zma01210 2-Oxocarboxylic acid metabolism 3
zma01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 15
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 3
ppo03050 Proteasome 3
ppo03013 Nucleocytoplasmic transport 2
ppo04148 Efferocytosis 2
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 8
mtr03015 mRNA surveillance pathway 4
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 8
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 10
hvu00510 N-Glycan biosynthesis 2
hvu00513 Various types of N-glycan biosynthesis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi03015 mRNA surveillance pathway 2
ghi03460 Fanconi anemia pathway 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 13
bna03060 Protein export 2
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 12
bna00010 Glycolysis / Gluconeogenesis 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 8
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 11
nta00100 Steroid biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 10
nta00100 Steroid biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5721750 838609 843931 100819526 100814379 100787034 101244534 4346252 4347735 100282792 100283005 103832045 100264130 100255691 7494234 7470413 11439915 11417232 123093147 123104638 123098420 123400202 123409228 123449448 107945069 107922352 107947201 106406159 106421645 8057843 102622301 100840664 100838341 107767362 107767363 107809945
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