ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_06g257500v5	uncharacterized protein
cre-r.1	CHLRE_12g559250v5	uncharacterized protein
ath-u.5	GRF7	general regulatory factor 7
ath-u.5	GRF3	general regulatory factor 3
ath-u.5	GRF1	general regulatory factor 1
gma-u.5	GF14B	14-3-3 protein SGF14b
gma-u.5	GF14A	14-3-3 protein SGF14a
gma-u.5	SGF14M	14-3-3 protein SGF14m
sly-u.5	101255667	14-3-3-like protein
sly-u.5	101247195	14-3-3 protein 2-like
sly-u.5	TFT3	14-3-3 protein homologue
osa-u.5	4350697	14-3-3-like protein GF14-D
osa-u.5	4345850	14-3-3-like protein GF14-A
osa-u.5	4345634	14-3-3-like protein GF14-C
zma-u.5	100279512	general regulatory factor 2
zma-u.5	100283215	14-3-3-like protein A
zma-u.5	100285226	uncharacterized LOC100285226
bra-r.6	103837581	14-3-3-like protein GF14 kappa
bra-r.6	103829331	14-3-3-like protein GF14 omega
bra-r.6	103830528	14-3-3-like protein GF14 omega
vvi-u.5	100854545	14-3-3-like protein G-BOX factor 14 kappa
vvi-u.5	100264912	14-3-3-like protein
vvi-u.5	100259987	14-3-3 protein 4-like
ppo-u.5	7461788	14-3-3-like protein
ppo-u.5	7468888	14-3-3-like protein
ppo-u.5	18097620	14-3-3-like protein A
mtr-u.5	11420882	14-3-3-like protein B
mtr-u.5	11432749	14-3-3-like protein A
mtr-u.5	11424391	14-3-3-like protein
tae-r.2	123045680	14-3-3-like protein GF14-B
tae-r.2	123060025	14-3-3-like protein B
tae-r.2	123068509	14-3-3-like protein B
hvu-r.1	123448590	14-3-3-like protein GF14-D
hvu-r.1	123447439	14-3-3-like protein A
hvu-r.1	123442615	14-3-3-like protein B
ghi-r.1	107943924	14-3-3-like protein
ghi-r.1	107934234	14-3-3-like protein A
ghi-r.1	107934138	14-3-3-like protein
bna-r.1	125593927	14-3-3-like protein GF14 lambda
bna-r.1	125583335	14-3-3-like protein GF14 nu
bna-r.1	125609154	14-3-3-like protein GF14 nu
sbi-r.1	110436948	14-3-3-like protein GF14-C
sbi-r.1	8055380	14-3-3-like protein GF14-A
sbi-r.1	8057015	14-3-3-like protein GF14-D
sot-r.1	102586856	14-3-3 protein 10
sot-r.1	RA215	14-3-3 protein-like protein
sot-r.1	102579744	14-3-3 protein 4
cit-r.1	107176588	14-3-3-like protein 16R
cit-r.1	102617582	14-3-3-like protein A
cit-r.1	102622535	14-3-3-like protein
bdi-r.1	100846146	14-3-3-like protein GF14-D
bdi-r.1	100840843	14-3-3-like protein GF14-E
bdi-r.1	100839161	14-3-3-like protein A
nta-r.1	107802962	14-3-3 protein 10
nta-r.1	107828339	14-3-3-like protein B
nta-r.1	107765116	14-3-3-like protein A

Top 50 coexpressed genes to CHLRE_06g257500v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_06g257500v5 (cre-r.1 coexpression data)

CoexMap"5722099"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0007165 [list] [network] signal transduction

(396 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(2907 genes)

IEA

GO MF

Protein

XP_001696613.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, plas 3, chlo_mito 3, nucl_plas 3

(predict for XP_001696613.1)

Subcellular
localization
TargetP

other 7

(predict for XP_001696613.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_06g257500v5	cre-r.1 for CHLRE_12g559250v5	ath-u.5 for GRF7	ath-u.5 for GRF3	ath-u.5 for GRF1	gma-u.5 for GF14B	gma-u.5 for GF14A	gma-u.5 for SGF14M	sly-u.5 for 101255667	sly-u.5 for 101247195	sly-u.5 for TFT3	osa-u.5 for 4350697	osa-u.5 for 4345850	osa-u.5 for 4345634	zma-u.5 for 100279512	zma-u.5 for 100283215	zma-u.5 for 100285226	bra-r.6 for 103837581	bra-r.6 for 103829331	bra-r.6 for 103830528	vvi-u.5 for 100854545	vvi-u.5 for 100264912	vvi-u.5 for 100259987	ppo-u.5 for 7461788	ppo-u.5 for 7468888	ppo-u.5 for 18097620	mtr-u.5 for 11420882	mtr-u.5 for 11432749	mtr-u.5 for 11424391	tae-r.2 for 123045680	tae-r.2 for 123060025	tae-r.2 for 123068509	hvu-r.1 for 123448590	hvu-r.1 for 123447439	hvu-r.1 for 123442615	ghi-r.1 for 107943924	ghi-r.1 for 107934234	ghi-r.1 for 107934138	bna-r.1 for 125593927	bna-r.1 for 125583335	bna-r.1 for 125609154	sbi-r.1 for 110436948	sbi-r.1 for 8055380	sbi-r.1 for 8057015	sot-r.1 for 102586856	sot-r.1 for RA215	sot-r.1 for 102579744	cit-r.1 for 107176588	cit-r.1 for 102617582	cit-r.1 for 102622535	bdi-r.1 for 100846146	bdi-r.1 for 100840843	bdi-r.1 for 100839161	nta-r.1 for 107802962	nta-r.1 for 107828339	nta-r.1 for 107765116

Ortholog

Ortholog ID: 264

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

CHLRE_06g257500v5

CHLRE_12g559250v5

GRF7

GRF3

GRF8

SGF14K

SGF14G

SGF14J

TFT6

tft4

RA215

35G

Function^*

uncharacterized protein

general regulatory factor 7

general regulatory factor 3

general regulatory factor 8

14-3-3 protein SGF14k

14-3-3 protein SGF14g

14-3-3 protein SGF14j

14-3-3 protein 6

14-3-3 family protein

14-3-3 protein

14-3-3-like protein GF14-C

14-3-3-like protein GF14-E

14-3-3-like protein GF14-F

14-3-3-like protein A

uncharacterized LOC100285226

14-3-3-like protein

14-3-3-like protein GF14 omega

14-3-3-like protein GF14 nu

14-3-3-like protein G-BOX factor 14 kappa

14-3-3 protein 4-like

14-3-3 protein

14-3-3-like protein

14-3-3-like protein B

14-3-3-like protein A

14-3-3-like protein

14-3-3-like protein GF14-B

14-3-3-like protein B

14-3-3-like protein GF14-A

14-3-3-like protein GF14-D

14-3-3-like protein GF14-B

14-3-3-like protein GF14-A

14-3-3-like protein A

14-3-3-like protein B

14-3-3-like protein

14-3-3-like protein GF14 psi

14-3-3-like protein GF14 lambda

14-3-3-like protein GF14 psi

14-3-3-like protein GF14-C

14-3-3-like protein GF14-A

14-3-3-like protein GF14-D

14-3-3 protein-like protein

14-3-3 protein 4

14-3-3 protein 1

14-3-3-like protein

14-3-3 protein 6

14-3-3-like protein GF14 kappa

14-3-3-like protein GF14-D

14-3-3-like protein GF14-C

14-3-3-like protein GF14-B

14-3-3-like protein C

14-3-3 protein 4

14-3-3-like protein E

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	4
cre03040	Spliceosome	3
cre04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	8
cre04145	Phagosome	5
cre04142	Lysosome	3
cre03015	mRNA surveillance pathway	2
cre04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	14
ath04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	4
ath04144	Endocytosis	2
ath04016	MAPK signaling pathway - plant	2
ath04070	Phosphatidylinositol signaling system	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	3
ath04144	Endocytosis	2
ath04145	Phagosome	2
ath04148	Efferocytosis	2
ath04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma04382	Cornified envelope formation	2
gma00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	3
sly04626	Plant-pathogen interaction	3
sly00510	N-Glycan biosynthesis	2
sly01240	Biosynthesis of cofactors	2
sly00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00020	Citrate cycle (TCA cycle)	5
sly01200	Carbon metabolism	5
sly03010	Ribosome	4
sly00640	Propanoate metabolism	3
sly01210	2-Oxocarboxylic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	4
osa03008	Ribosome biogenesis in eukaryotes	2
osa03250	Viral life cycle - HIV-1	2
osa03015	mRNA surveillance pathway	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	3
osa00020	Citrate cycle (TCA cycle)	2
osa01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04814	Motor proteins	2
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	7
bra03013	Nucleocytoplasmic transport	2
bra03015	mRNA surveillance pathway	2
bra03040	Spliceosome	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	8
bra01230	Biosynthesis of amino acids	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	2
bra03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	4
vvi04130	SNARE interactions in vesicular transport	4
vvi03250	Viral life cycle - HIV-1	2
vvi03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5
vvi00260	Glycine, serine and threonine metabolism	2
vvi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo04814	Motor proteins	3
ppo04016	MAPK signaling pathway - plant	2
ppo04070	Phosphatidylinositol signaling system	2
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04626	Plant-pathogen interaction	3
ppo04144	Endocytosis	2
ppo04016	MAPK signaling pathway - plant	2
ppo04070	Phosphatidylinositol signaling system	2
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00020	Citrate cycle (TCA cycle)	3
mtr00190	Oxidative phosphorylation	3
mtr01200	Carbon metabolism	3
mtr03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	7
tae04075	Plant hormone signal transduction	7
tae03013	Nucleocytoplasmic transport	3
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00071	Fatty acid degradation	2
hvu00410	beta-Alanine metabolism	2
hvu01200	Carbon metabolism	2
hvu04016	MAPK signaling pathway - plant	2
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	4
sbi04120	Ubiquitin mediated proteolysis	2
sbi04141	Protein processing in endoplasmic reticulum	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	5
sbi00010	Glycolysis / Gluconeogenesis	4
sbi00710	Carbon fixation by Calvin cycle	4
sbi01230	Biosynthesis of amino acids	4
sbi00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04145	Phagosome	4
sot00190	Oxidative phosphorylation	3
sot04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	4
sot04070	Phosphatidylinositol signaling system	4
sot04075	Plant hormone signal transduction	4
sot04626	Plant-pathogen interaction	4
sot00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01230	Biosynthesis of amino acids	3
cit00190	Oxidative phosphorylation	2
cit00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	7
bdi04145	Phagosome	5
bdi04142	Lysosome	4
bdi00020	Citrate cycle (TCA cycle)	2
bdi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00520	Amino sugar and nucleotide sugar metabolism	5
bdi01250	Biosynthesis of nucleotide sugars	5
bdi01240	Biosynthesis of cofactors	4
bdi00040	Pentose and glucuronate interconversions	3
bdi00053	Ascorbate and aldarate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	4
bdi04626	Plant-pathogen interaction	4
bdi00900	Terpenoid backbone biosynthesis	2
bdi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	5
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	5
nta04120	Ubiquitin mediated proteolysis	3
nta04141	Protein processing in endoplasmic reticulum	3
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

5722099

5728351

821060

833836

836668

100794129

100798989

100818967

543562

543565

543791

4345634

4329775

4333880

100283215

100285226

542285

103830528

103835702

103858966

100854545

100259987

100257548

7461788

7468888

7468865

11420882

11432749

11424391

123045680

123060025

123160118

123448590

123426924

123413622

107934234

107905057

107957777

106429451

106384897

106352652

110436948

8055380

8057015

102577702

102579744

102580766

102622535

102623806

102630484

100846146

100824107

100824144

107777576

107813146

107829791

The preparation time of this page was 0.2 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	2	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_06g257500v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_06g257500v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**