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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g255450v5   uncharacterized protein 
 ath-u.5   RBR1   retinoblastoma-related 1 
 gma-u.5   100777429   retinoblastoma-related protein 1 
 gma-u.5   100777805   retinoblastoma-related protein 1 
 gma-u.5   100779266   retinoblastoma-related protein 1 
 sly-u.5   RBR1   retinoblastoma-related protein 1 
 osa-u.5   4346176   retinoblastoma-related protein 1-like 
 osa-u.5   4350648   retinoblastoma-related protein 2-like 
 zma-u.5   100217179   uncharacterized LOC100217179 
 zma-u.5   732723   retinoblastoma-related 3 
 zma-u.5   541652   Retinoblastoma-related protein 2 
 bra-r.6   103870260   retinoblastoma-related protein 1 
 bra-r.6   103249150   retinoblastoma-related protein 1 
 bra-r.6   103859438   retinoblastoma-related protein 1 
 vvi-u.5   RBR   retinoblastoma-related protein-like 
 vvi-u.5   100261814   retinoblastoma-related protein-like 
 ppo-u.5   7455806   retinoblastoma-related protein-like 
 mtr-u.5   11429529   retinoblastoma-related protein 
 tae-r.2   123152064   retinoblastoma-related protein 1 
 tae-r.2   100137000   retinoblastoma-related protein 1-like 
 tae-r.2   123165294   retinoblastoma-related protein 1-like 
 hvu-r.1   123407429   retinoblastoma-related protein 1 
 hvu-r.1   123448537   retinoblastoma-related protein 2-like 
 ghi-r.1   107927600   retinoblastoma-related protein 
 ghi-r.1   107927587   retinoblastoma-related protein 
 ghi-r.1   107904794   retinoblastoma-related protein 
 bna-r.1   106351903   retinoblastoma-related protein 1 
 bna-r.1   106353083   retinoblastoma-related protein 1 
 bna-r.1   106400756   retinoblastoma-related protein 1 
 sbi-r.1   8060923   retinoblastoma-related protein 3 
 sbi-r.1   8068661   retinoblastoma-related protein 1 
 sbi-r.1   8056978   retinoblastoma-related protein 1 
 sot-r.1   102593734   retinoblastoma-related protein 1 
 cit-r.1   102611926   retinoblastoma-related protein-like 
 cit-r.1   102611028   retinoblastoma-related protein 
 bdi-r.1   100844602   retinoblastoma-related protein 2 
 bdi-r.1   100826156   retinoblastoma-related protein 1 
 nta-r.1   107801954   retinoblastoma-related protein 1-like 
 nta-r.1   107777437   retinoblastoma-related protein 1 

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Top 50 coexpressed genes to CHLRE_06g255450v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g255450v5 (cre-r.1 coexpression data)

CoexMap"5722130"


creCHLRE_06g255450v5 | Entrez gene ID : 5722130      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 3 1 2 3 3 2 1 1 3 2 3 3 3 1 2 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:2000134 [list] [network] negative regulation of G1/S transition of mitotic cell cycle  (1 genes)  IEA  
GO:0030154 [list] [network] cell differentiation  (9 genes)  IEA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (190 genes)  IEA  
GO CC
GO:0005667 [list] [network] transcription regulator complex  (54 genes)  IEA  
GO:0000785 [list] [network] chromatin  (219 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (37 genes)  IEA  
Protein XP_042923395.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  cyto 1,  mito 1,  vacu 1,  cyto_nucl 1  (predict for XP_042923395.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042923395.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g255450v5
ath-u.5
for
RBR1
gma-u.5
for
100777429
gma-u.5
for
100777805
gma-u.5
for
100779266
sly-u.5
for
RBR1
osa-u.5
for
4346176
osa-u.5
for
4350648
zma-u.5
for
100217179
zma-u.5
for
732723
zma-u.5
for
541652
bra-r.6
for
103870260
bra-r.6
for
103249150
bra-r.6
for
103859438
vvi-u.5
for
RBR
vvi-u.5
for
100261814
ppo-u.5
for
7455806
mtr-u.5
for
11429529
tae-r.2
for
123152064
tae-r.2
for
100137000
tae-r.2
for
123165294
hvu-r.1
for
123407429
hvu-r.1
for
123448537
ghi-r.1
for
107927600
ghi-r.1
for
107927587
ghi-r.1
for
107904794
bna-r.1
for
106351903
bna-r.1
for
106353083
bna-r.1
for
106400756
sbi-r.1
for
8060923
sbi-r.1
for
8068661
sbi-r.1
for
8056978
sot-r.1
for
102593734
cit-r.1
for
102611926
cit-r.1
for
102611028
bdi-r.1
for
100844602
bdi-r.1
for
100826156
nta-r.1
for
107801954
nta-r.1
for
107777437


Ortholog ID: 3574
Species cre ath gma gma gma sly osa osa zma zma zma bra bra bra vvi vvi ppo mtr tae tae tae hvu hvu ghi ghi ghi bna bna bna sbi sbi sbi sot cit cit bdi bdi nta nta
Symbol CHLRE_06g255450v5 RBR1 LOC100777429 LOC100777805 LOC100779266 RBR1 LOC4346176 LOC4350648 LOC100217179 LOC732723 LOC541651 LOC103870260 LOC103249150 LOC103859438 RBR LOC100261814 LOC7455806 LOC11429529 LOC100137000 LOC123085899 LOC123097360 LOC123407429 LOC123448537 LOC107927600 LOC107927587 LOC107904794 LOC106351903 LOC106435408 LOC106418451 LOC8068661 LOC8056978 LOC110435973 LOC102593734 LOC102611926 LOC102611028 LOC100844602 LOC100826156 LOC107801954 LOC107777437
Function* uncharacterized protein retinoblastoma-related 1 retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein 1-like retinoblastoma-related protein 2-like uncharacterized LOC100217179 retinoblastoma-related 3 ZmRB retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein-like retinoblastoma-related protein-like retinoblastoma-related protein-like retinoblastoma-related protein retinoblastoma-related protein 1-like retinoblastoma-related protein 2 retinoblastoma-related protein 2 retinoblastoma-related protein 1 retinoblastoma-related protein 2-like retinoblastoma-related protein retinoblastoma-related protein retinoblastoma-related protein retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein 1-like retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein 2-like retinoblastoma-related protein 1 retinoblastoma-related protein-like retinoblastoma-related protein retinoblastoma-related protein 2 retinoblastoma-related protein 1 retinoblastoma-related protein 1-like retinoblastoma-related protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 7
ath03430 Mismatch repair 3
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 12
osa03440 Homologous recombination 3
osa03420 Nucleotide excision repair 3
osa03430 Mismatch repair 2
osa03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 12
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 5
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03460 Fanconi anemia pathway 2
bra03013 Nucleocytoplasmic transport 2
bra03410 Base excision repair 2
bra03030 DNA replication 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03430 Mismatch repair 5
bra03410 Base excision repair 4
bra03030 DNA replication 3
bra03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
ppo01232 Nucleotide metabolism 2
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00330 Arginine and proline metabolism 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae03040 Spliceosome 3
tae00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00220 Arginine biosynthesis 2
tae00250 Alanine, aspartate and glutamate metabolism 2
tae00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 8
ghi03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 8
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 8
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
bna03430 Mismatch repair 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
bna03430 Mismatch repair 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 9
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5722130 820408 100777429 100777805 100779266 101055575 4346176 4350648 100217179 732723 541651 103870260 103249150 103859438 100261011 100261814 7455806 11429529 100137000 123085899 123097360 123407429 123448537 107927600 107927587 107904794 106351903 106435408 106418451 8068661 8056978 110435973 102593734 102611926 102611028 100844602 100826156 107801954 107777437
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